View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_high_5 (Length: 413)
Name: NF18020_high_5
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 39993615 - 39993397
Alignment:
| Q |
17 |
aaccccatgcaaattctaatgacaacaccatctttacgtgaattgtagcaggatgtcaccccaaattgaagctggnnnnnnn-ccaaacaattcaaaata |
115 |
Q |
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| T |
39993615 |
aaccccatgcaaattctaatgacaacaccatctttacgtgaattgtaacaggatgtcaccccaaattgaagctggaaacaaaaccaaacaattcaaaata |
39993516 |
T |
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| Q |
116 |
taaatttcctcattgctataaccaaatactatattgtatgaatttttatggaggacttacagcagtccatgaaaagaaagcaagctggaaggcattctgt |
215 |
Q |
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| T |
39993515 |
tgaatttcctcattgctataaccaaatactatattgtatgaatttttatggaggacttacagcagtccatgaaaagaaagcaagctggaaggcattctgt |
39993416 |
T |
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| Q |
216 |
ttcaataaatatatgcaac |
234 |
Q |
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| T |
39993415 |
ttcaataaatatatgcaac |
39993397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 286 - 406
Target Start/End: Complemental strand, 39993372 - 39993252
Alignment:
| Q |
286 |
attgatgttagtgcttttgaaaattattacacagattagtagtatatatacctgaaagagtacaaaattaataaggaagagaataagtctaggtttgtta |
385 |
Q |
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| T |
39993372 |
attgatgttagtgcttttgaaaattattacacagattagtagtatttatacctgaaagagtacaaaattaataaggaagagaataagtctaggtttgtta |
39993273 |
T |
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| Q |
386 |
aaccaaaagaggtcatcccta |
406 |
Q |
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| T |
39993272 |
aaccaaaagaggtcatcccta |
39993252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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