View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_10 (Length: 373)
Name: NF18020_low_10
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 44924147 - 44924480
Alignment:
| Q |
19 |
ataacagataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44924147 |
ataacagataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaag |
44924246 |
T |
|
| Q |
119 |
cagatcattaatgcaagtttcacaattataagttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtttcggttggatac |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44924247 |
cagatcattaatgcaagtttcacagttataagttctcaaaaggcacaggaaagtcctacaccatatgaagcatagttggatcaaagtttcggttggatac |
44924346 |
T |
|
| Q |
219 |
acgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatc |
318 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44924347 |
acaggtataccatcaaaataagcaatatcaaacag-------ctaaataatattctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatc |
44924439 |
T |
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| Q |
319 |
atcaaatgtattggagcaaaacttaatacttagaaaagaaa |
359 |
Q |
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| T |
44924440 |
atcaaatgtattggagcaaaacttaatacttagaaaagaaa |
44924480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 183 - 363
Target Start/End: Original strand, 6908338 - 6908510
Alignment:
| Q |
183 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
6908338 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaa-------taatattctcttacaca |
6908430 |
T |
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| Q |
283 |
cagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagat |
363 |
Q |
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| T |
6908431 |
cagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaaac-taatacttagaaaagaaaagat |
6908510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 363
Target Start/End: Complemental strand, 6901855 - 6901713
Alignment:
| Q |
215 |
atacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaa |
314 |
Q |
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|||||||| ||||||||||||| | |||||||||||| |||||| |||| ||||||||||| || ||||| ||||||||||||||||| ||||| |
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| T |
6901855 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaa-------taatattctcttacacacaccatcaggtaaaaggttcaattataacaaa |
6901763 |
T |
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| Q |
315 |
gatcat-caaatgtattggagcaaaacttaatacttagaaaagaaaagat |
363 |
Q |
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||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6901762 |
gataattcaaatgtattggagcaaaacttaatacttggaaaagaaaagat |
6901713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 183 - 363
Target Start/End: Complemental strand, 202649 - 202476
Alignment:
| Q |
183 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacg |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
202649 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccatcaaaacaagcaatatcaaacagctaaa-------taatattctcttacaca |
202557 |
T |
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| Q |
283 |
cagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagat |
363 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202556 |
gagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagat |
202476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 215 - 363
Target Start/End: Original strand, 206482 - 206624
Alignment:
| Q |
215 |
atacacgggtataccatcaaaataagcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaa |
314 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||| |||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
206482 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaa-------taatattctcttacacacaccatcaagtaaaaggttcaattataacaaa |
206574 |
T |
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| Q |
315 |
gatca-tcaaatgtattggagcaaaacttaatacttagaaaagaaaagat |
363 |
Q |
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||||| | |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
206575 |
gatcatttaaatgtattggagcaaaacttaatacttggaaaagaaaagat |
206624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 361
Target Start/End: Complemental strand, 29514984 - 29514676
Alignment:
| Q |
46 |
atttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacaatt |
145 |
Q |
| |
|
||||||| ||||||||||| | || |||||||||||| |||||||||| ||||||||| |||| || | || || || | ||| ||||||||| |||| |
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| T |
29514984 |
atttgtgtttaaaatgtcaagtggtgtacaaatcacaaactatatcattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaatt |
29514885 |
T |
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| Q |
146 |
ataagttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtttcggttgg----atacacgggtatacc--atcaaaataa |
239 |
Q |
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| |||||||||||||||| ||| ||||||| ||||||||||||||| || |||||| |||||| |||||| || | ||| ||||||||| |
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| T |
29514884 |
acaagttctcaaaaggcagagg------ctacaccatatgaagcatagttgaattgaagttttggttggttcgatacacaggcacaccccatcaaaatat |
29514791 |
T |
|
| Q |
240 |
gcaatatcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaa |
339 |
Q |
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|||| ||||||| |||||| |||| | ||| |||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29514790 |
gcaaaatcaaactgctaaa-------taatatactcatacaaactccattaagtaaaaggttcaattatcataaagatcatcaaatgtattggagcaaaa |
29514698 |
T |
|
| Q |
340 |
cttaatacttagaaaagaaaag |
361 |
Q |
| |
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|| |||||| ||||||||||| |
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| T |
29514697 |
ctctatacttggaaaagaaaag |
29514676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 43632417 - 43632255
Alignment:
| Q |
150 |
gttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtttcggttgg----atacacgggtataccatcaaaataagcaata |
245 |
Q |
| |
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|||| |||||||||| ||||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| |||| | |
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| T |
43632417 |
gttcgcaaaaggcacgggaaagacctacaccatatgaagcacagttgattcaaagttttggttggttggatacacgggtataccatcaaaatatgcaaaa |
43632318 |
T |
|
| Q |
246 |
tcaaacagctaaagcctaaataatgttctcttacacgcagcatcaagtaaaaggttcaattatcacaaagatcat |
320 |
Q |
| |
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|||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
43632317 |
tcaaactgctaa---cta---------ttcttacatacaacatcaagtaaaaggttcaattatcacaaagatcat |
43632255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 43997781 - 43997894
Alignment:
| Q |
150 |
gttctcaaaaggcacaggaaagacctacaccgtatgaagcatagttggatcaaagtt----tcggttggatacac-gggtataccatcaaaataagcaat |
244 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||| |||| |
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| T |
43997781 |
gttcccaaaaggcacgggaaagacctacaccatatgaagcatagttgattcaaagttttggttggttggatacacggggtataccatcaaaatatgcaaa |
43997880 |
T |
|
| Q |
245 |
atcaaacagctaaa |
258 |
Q |
| |
|
||||||| |||||| |
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|
| T |
43997881 |
atcaaactgctaaa |
43997894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 24653035 - 24652992
Alignment:
| Q |
320 |
tcaaatgtattggagcaaaacttaatacttagaaaagaaaagat |
363 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24653035 |
tcaaatgtattggagcaaaacttaatacttggaaaagaaaagat |
24652992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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