View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_11 (Length: 364)
Name: NF18020_low_11
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 4911331 - 4911480
Alignment:
| Q |
18 |
ttctacgctcagtcttgttcagtttctagcgttttccattgcttcacacaggttaggaag---aagaaggttcatgtgcgattcatcctcaaatttacgt |
114 |
Q |
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| T |
4911331 |
ttctacgccgagtcttgttcagtttctagcgttttccattgcttcacacaggttaggaagaagaagaaggttcatgtgcgattcatcctcaaatttacgt |
4911430 |
T |
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| Q |
115 |
tttcaactgtttttatttacattacttgctcaagaagtagccttgttcaa |
164 |
Q |
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| T |
4911431 |
tttcaactgtttttatttacattacttgctcaagaagtagccttgttcaa |
4911480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 227 - 357
Target Start/End: Original strand, 4911543 - 4911673
Alignment:
| Q |
227 |
acagtgtgtgtgagaaatgggtacacagaagaagcatattgaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagat |
326 |
Q |
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| T |
4911543 |
acagtgtgtgtgaaaaattggtacacagaagaagcatattgaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagat |
4911642 |
T |
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| Q |
327 |
cttcatcaagctgttaagaatctctctgctg |
357 |
Q |
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| T |
4911643 |
cttcatcaagctgttaagaatctctctgctg |
4911673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 2935473 - 2935362
Alignment:
| Q |
241 |
aaatgggtacacagaagaagcatattgaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgt |
340 |
Q |
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| T |
2935473 |
aaatggctacacagaaaaaacacattgaagagatacgaaggaaaaagttctccattggtggcaatccaaaccctttgactgaggaccttcaccaagctgt |
2935374 |
T |
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| Q |
341 |
taagaatctctc |
352 |
Q |
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| T |
2935373 |
caagaatctctc |
2935362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 37800240 - 37800142
Alignment:
| Q |
259 |
agcatattgaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctctctgctg |
357 |
Q |
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| T |
37800240 |
agcatgttgaagtgataagaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctg |
37800142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 2953676 - 2953580
Alignment:
| Q |
264 |
attgaagagatacgaaggagaaaa-ttctctattggcgggaaac---caaaccctttgattgaagatcttcatcaagctgttaagaatctctctgctg |
357 |
Q |
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| T |
2953676 |
attgaagagatacgaag-agaaaagttctctattggtgagaaacgagcaaatcctttgattgaagatcttcatcaagctgtcaagaatctctcggctg |
2953580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 3008033 - 3008146
Alignment:
| Q |
242 |
aatgggtacacagaagaagcatattgaagagatacgaaggagaaaa-ttctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgt |
340 |
Q |
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| T |
3008033 |
aatgggtacaccgaaagaacacattgaagagatacgaa-gagaaaagttttctattggtgggaaacctaatccattgacttatgatctccatcatgcagt |
3008131 |
T |
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| Q |
341 |
taagaatctctctgc |
355 |
Q |
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| T |
3008132 |
caagaatctctctgc |
3008146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 2925612 - 2925529
Alignment:
| Q |
267 |
gaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctct |
351 |
Q |
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| T |
2925612 |
gaagagatacgaagaaaaaagtt-tccattggtgggaaacctaatccattgactgaagatcttcatcatgctgtcaaaaatctct |
2925529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 28029479 - 28029392
Alignment:
| Q |
265 |
ttgaagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctctc |
352 |
Q |
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| T |
28029479 |
ttgaagagatacgaaggacaaagttctctattggtggaaatcctaatcctttgactgaggatcttcatcatgccgttaagaatctctc |
28029392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 1502030 - 1502119
Alignment:
| Q |
268 |
aagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctctctgctg |
357 |
Q |
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| T |
1502030 |
aagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctg |
1502119 |
T |
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