View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_12 (Length: 342)
Name: NF18020_low_12
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 36288967 - 36289280
Alignment:
| Q |
19 |
taataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgaaccaagg |
118 |
Q |
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| T |
36288967 |
taataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgaaccaagg |
36289066 |
T |
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| Q |
119 |
gatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtggtaatagttctggtggagatgatg |
218 |
Q |
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| T |
36289067 |
gatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaagagtgagagaggtggtaatagttctggtggagatgatg |
36289166 |
T |
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| Q |
219 |
gttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaaggaaattgtctgaagaatagttc |
318 |
Q |
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| T |
36289167 |
gttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaaggaaattgtctgaagaatagttc |
36289266 |
T |
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| Q |
319 |
ttgtactgcctatg |
332 |
Q |
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| T |
36289267 |
ttgtactgcctatg |
36289280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 14521329 - 14521271
Alignment:
| Q |
275 |
gttgatagtaaggattgtgaaggaaattgtctgaagaatagttcttgtactgcctatgc |
333 |
Q |
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| T |
14521329 |
gttgatactaaggattgtgaaggtaattgtttggagaatgcttcttgtactgcttatgc |
14521271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 12096656 - 12096373
Alignment:
| Q |
13 |
tgagattaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgaa |
112 |
Q |
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| T |
12096656 |
tgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgag |
12096557 |
T |
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| Q |
113 |
ccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtgagaggatgactccattgaagagtgagagaggtggtaatagttctggtggag |
212 |
Q |
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| T |
12096556 |
ccaaaggatgtgaaaagttgggatagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggcagtaatagttttggtggag |
12096457 |
T |
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| Q |
213 |
atgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaag |
296 |
Q |
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| T |
12096456 |
aagatggttttttggtgcaaaggattttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaag |
12096373 |
T |
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