View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_13 (Length: 335)
Name: NF18020_low_13
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 38991027 - 38991331
Alignment:
| Q |
18 |
ggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggta |
117 |
Q |
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| T |
38991027 |
ggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggta |
38991126 |
T |
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| Q |
118 |
tgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggact |
217 |
Q |
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| T |
38991127 |
tgagataacgagctgtgaatggtgatgtcagagacaataccaaaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggact |
38991226 |
T |
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| Q |
218 |
ccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttgga |
317 |
Q |
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| T |
38991227 |
ccaaaacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtgtcttgggcttgtttttgga |
38991326 |
T |
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| Q |
318 |
gccct |
322 |
Q |
| |
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||||| |
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| T |
38991327 |
gccct |
38991331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 38954744 - 38954444
Alignment:
| Q |
22 |
atgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatggg |
121 |
Q |
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| T |
38954744 |
atgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagagacatcattttgatgggtccttcaatagttagtgcaggggaatgag |
38954645 |
T |
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| Q |
122 |
ataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaa |
221 |
Q |
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| T |
38954644 |
atgtcgagttacggatggtaatattagagacaagaccggaacctctcattactgagatatcagcttgatgacgccaagccatcttgatgatggactccac |
38954545 |
T |
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| Q |
222 |
aacatcatacccagcagggatttcaataaatatttgtttcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccc |
321 |
Q |
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| T |
38954544 |
aacatcacatccagctgatatttcgataaaaatttgtttcataaaactttcaggctctacggtgatcaccactgggggtttgggtttatttttggagccc |
38954445 |
T |
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| Q |
322 |
t |
322 |
Q |
| |
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| T |
38954444 |
t |
38954444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 299
Target Start/End: Original strand, 18528036 - 18528173
Alignment:
| Q |
161 |
aacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgttt |
260 |
Q |
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||||||||||||||| |||||| |||| || ||||||| ||| |||||||||||||||| |||||||||| || |||||||| |||||| |||||||| |
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| T |
18528036 |
aacctctcagcactgagatgtctgcttgataacgccaattcattttgatgatggactccacaacatcatactcaatagggattttaataaaaatttgttt |
18528135 |
T |
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| Q |
261 |
cattaatgtttgaggctctaccataaccaccgcaggtgg |
299 |
Q |
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|| ||| |||| |||||||||||||| |||| ||||||| |
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| T |
18528136 |
ca-taaggtttcaggctctaccataatcaccacaggtgg |
18528173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 322
Target Start/End: Complemental strand, 18527925 - 18527763
Alignment:
| Q |
160 |
gaacctctcagcactgtgatgtcagcttcatgacgccaagccatcttgatgatggactccaaaacatcatacccagcagggatttcaataaatatttgtt |
259 |
Q |
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|||||||||| ||| | |||||| || ||| |||||||||||| ||||||||| |||| || |||||| ||||| |||||||||||| ||| ||| |
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| T |
18527925 |
gaacctctcatcacagatatgtcatctagatgtcgccaagccatcctgatgatggtttccataaaatcatatatagcagagatttcaataaaaattagtt |
18527826 |
T |
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| Q |
260 |
tcattaatgtttgaggctctaccataaccaccgcaggtggcttgggcttgtttttggagccct |
322 |
Q |
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|||| || |||| || |||||||| | |||| || ||| ||||| ||||| ||| |||||| |
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| T |
18527825 |
tcataaaagttttgggatctaccatgatcaccacatatggtttgggtttgttcttgtagccct |
18527763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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