View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18020_low_17 (Length: 269)
Name: NF18020_low_17
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_17 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 44924501 - 44924751
Alignment:
| Q |
1 |
cgagcaaagatttcctcacacaataaacagggatggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44924501 |
cgagcaaagatttcctcacacaataaacagggatggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctag |
44924600 |
T |
|
| Q |
101 |
agcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924601 |
agcaaggatctaagcaaaatgaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttca |
44924700 |
T |
|
| Q |
201 |
cttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44924701 |
cttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
44924751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 6908528 - 6908778
Alignment:
| Q |
2 |
gagcaaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
6908528 |
gagcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagggcagatataaaaaggctag |
6908627 |
T |
|
| Q |
101 |
agcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6908628 |
agcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagcctttaagttctttcg |
6908727 |
T |
|
| Q |
201 |
cttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6908728 |
tttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
6908778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 6901692 - 6901497
Alignment:
| Q |
56 |
gcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcacc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6901692 |
gcatgatagaaaatctaaagtctaggacagatataaaaaggcgagagcaaggatctaagaaaatgaaaatcataatttaatcttcatcctcctcatcacc |
6901593 |
T |
|
| Q |
156 |
gtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
6901592 |
atcaccaccggaagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtc |
6901497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 44927080 - 44927201
Alignment:
| Q |
130 |
atttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccga |
229 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||| |||||| ||| ||||||||||||| || | |
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|
| T |
44927080 |
atttaatcttcatcctcctcatctccatcaccaccggaagccttcttggctgcagccttaaggttctttcacttcacgcgaccaggaagaccaccaccaa |
44927179 |
T |
|
| Q |
230 |
aaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
| ||||||||||| |||||||| |
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|
| T |
44927180 |
agggacttgtgagggaaaagtc |
44927201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 202459 - 202207
Alignment:
| Q |
1 |
cgagcaaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggcta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
202459 |
cgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagggcagatataaaaaggcta |
202360 |
T |
|
| Q |
100 |
gagcaaggatctaagcaaaagaaaatcataa-tttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttcttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
202359 |
gagcaaggatctaagcaaaagaaaatcataaatttaatcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagcctttaagttcttt |
202260 |
T |
|
| Q |
199 |
cgcttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202259 |
cgcttcacacgaccaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
202207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 206643 - 206892
Alignment:
| Q |
3 |
agcaaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctaga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
206643 |
agcaaagatttcctcacacaataaacagggatgggaaaacggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctaga |
206742 |
T |
|
| Q |
102 |
gcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgc |
201 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
206743 |
gcaaggatctaagaaaatgaaaatcataatttaatcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagccttaaggttcttacgc |
206842 |
T |
|
| Q |
202 |
ttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
206843 |
ttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtc |
206892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 24652974 - 24652724
Alignment:
| Q |
2 |
gagcaaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24652974 |
gagcaaagatttcctcacacaataaacagggatgggaaaacggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctag |
24652875 |
T |
|
| Q |
101 |
agcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcg |
200 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| || |
|
|
| T |
24652874 |
agcaaggatctaagaaaatgaaaatcataatttaatcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagccttaaggttcttacg |
24652775 |
T |
|
| Q |
201 |
cttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
24652774 |
cttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtc |
24652724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 29514657 - 29514400
Alignment:
| Q |
1 |
cgagcaaagatttcctcacacaataaacagggat-ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggcta |
99 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
29514657 |
cgagcaaagatttactcgcacaataaacaaggataggaaaatggtaaaagtcatatgcatgatagaaaatctaaagtctaggacagatatcaagaggcta |
29514558 |
T |
|
| Q |
100 |
gagcaaggatctaagcaaaagaaaatcataat------ttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | || |
|
|
| T |
29514557 |
gagcaaggatctaagcaaaagaaaatcataatttaaatttaatcttcatcctcctcatcaccatcaccaccagaagccttcttggctgcagccttaaggt |
29514458 |
T |
|
| Q |
194 |
tctttcgcttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
||||||||||||| ||| | ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
29514457 |
tctttcgcttcacgcgaccgggaagaccaccaccaaaaggacttgtgagtgaaaagtc |
29514400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 43626355 - 43626109
Alignment:
| Q |
6 |
aaagatttcctcacacaataaacagggatgg--aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagc |
103 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43626355 |
aaagatttccttacacaataaacaaggatgagaaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagata--aaaaggctagagc |
43626258 |
T |
|
| Q |
104 |
aaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctg-cagcctttaagttctttcgct |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| ||| | | ||||||||||||||||||||||| ||| ||| | ||||||||||| |
|
|
| T |
43626257 |
aaggatctaagtaaaagaaaatcataatttaaccttcatcctcctcgtcaacatgaccaccggaagccttcttggctgccagtcttaaggttctttcgct |
43626158 |
T |
|
| Q |
203 |
tcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtc |
251 |
Q |
| |
|
|||||||| ||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
43626157 |
tcacacgaccaggaagacaaccaccaaaaggacttgtgagtgaaaagtc |
43626109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 43997926 - 43998065
Alignment:
| Q |
6 |
aaagatttcctcacacaataaacagggatgg-aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagca |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
43997926 |
aaagatttcctcacacaataaacaaggatgggaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagcta--aaaaggctagagca |
43998023 |
T |
|
| Q |
105 |
aggatctaagcaaaagaaaatcataatttaatcttcatcctc |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43998024 |
aggatctaagcaaaagaaaatcataatttaaccttcatcctc |
43998065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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