View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18020_low_18 (Length: 255)

Name: NF18020_low_18
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18020_low_18
NF18020_low_18
[»] chr4 (2 HSPs)
chr4 (1-240)||(52351395-52351634)
chr4 (49-237)||(20297029-20297217)
[»] chr7 (1 HSPs)
chr7 (45-180)||(26706817-26706952)
[»] chr5 (13 HSPs)
chr5 (20-150)||(30474829-30474959)
chr5 (44-175)||(29871658-29871789)
chr5 (45-180)||(30749116-30749251)
chr5 (44-180)||(30242867-30243003)
chr5 (20-180)||(30522117-30522277)
chr5 (20-180)||(30562457-30562617)
chr5 (45-180)||(30399550-30399685)
chr5 (84-180)||(30430467-30430563)
chr5 (44-180)||(30482876-30483012)
chr5 (44-180)||(30713917-30714053)
chr5 (45-130)||(17982400-17982485)
chr5 (55-92)||(30206008-30206045)
chr5 (44-180)||(17418652-17418788)
[»] chr1 (2 HSPs)
chr1 (44-176)||(7098896-7099028)
chr1 (45-110)||(7582284-7582349)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 52351395 - 52351634
Alignment:
Q  1 tcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351395 tcaatagcattattggcacgtgtcttagttttaccactgttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaa 52351494  T
Q  101 catcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52351495 catcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaagttgtgccccgtttttgatct 52351594  T
Q  201 gactacgtatacacttactgttcttagggaagataatctt 240  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  52351595 gactatgtatacacttactgttcttagggaagataatctt 52351634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 20297217 - 20297029
Alignment:
Q  49 gacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttc 148  Q
    |||| |||||||||  | |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc 20297118  T
Q  149 cttctagctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacacttactgttcttagggaagataat 237  Q
    |  | || ||||||||||||||||||| |||| | | |||  ||||| | || || | ||| ||||||| |||||||||  ||||||||    
T  20297117 caccaagttttagatcacgtaactctgtcaagctattccctttctttaaactaacaatgtacacacttaatgttcttagacaagataat 20297029  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 26706817 - 26706952
Alignment:
Q  45 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 144  Q
    |||||||| |||||||| |  ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || ||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt 26706916  T
Q  145 tttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||  | || ||||||||||||||||||| ||||    
T  26706917 tttccaccgaggtttagatcacgtaactctgtcaag 26706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 30474829 - 30474959
Alignment:
Q  20 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 119  Q
    |||||| ||||| |||| | || |||||||||| | |||||||| ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | |||    
T  30474829 gtgtctcagtttcaccattattcctccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaac 30474928  T
Q  120 attttctaggccttcaatgctcagttttcct 150  Q
    |||| | || ||||  |||||||||||||||    
T  30474929 atttcccagaccttgtatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 29871658 - 29871789
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    ||||||||| ||||||||   | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag 29871757  T
Q  144 ttttccttctagctttagatcacgtaactctg 175  Q
    ||||||  | || |||||||||||||||||||    
T  29871758 ttttccaccgagttttagatcacgtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 30749116 - 30749251
Alignment:
Q  45 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 144  Q
    |||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt 30749215  T
Q  145 tttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30749216 tttccaccgaggtttagatcacgtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 30243003 - 30242867
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | || |  ||  || |||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag 30242904  T
Q  144 ttttccttctagctttagatcacgtaactctgccaag 180  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30242903 ttttccaccgaggtttagatcacgtaactctgtcaag 30242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 30522277 - 30522117
Alignment:
Q  20 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 119  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30522277 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30522178  T
Q  120 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30522177 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30522117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 30562617 - 30562457
Alignment:
Q  20 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 119  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30562617 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30562518  T
Q  120 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30562517 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 30399550 - 30399685
Alignment:
Q  45 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 144  Q
    |||||||| |||||||||  | ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | ||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt 30399649  T
Q  145 tttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30399650 tttccaccgaggtttagatcacgtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  84 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 180  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 30482876 - 30483012
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  ||   |||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag 30482975  T
Q  144 ttttccttctagctttagatcacgtaactctgccaag 180  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30482976 ttttccaccgaggtttagatcacgtaactctgtcaag 30483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 30714053 - 30713917
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    ||||||||| | |||||||  | ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||    
T  30714053 tccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcag 30713954  T
Q  144 ttttccttctagctttagatcacgtaactctgccaag 180  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30713953 ttttccaccgaggtttagatcacgtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 17982400 - 17982485
Alignment:
Q  45 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggc 130  Q
    ||||||||||||||||||   ||||||||||||||| || ||||| || |||  ||| |||||||| || || ||||||| |||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgtaggc 17982485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 30206008 - 30206045
Alignment:
Q  55 cataattctcggaggtcttttttacccatcaaattggc 92  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 17418788 - 17418652
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    |||| |||| |||||||||| |||||||||||||||| ||||| || || ||| || | ||||||||  | | ||||| || || |||||  || ||||     
T  17418788 tccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaa 17418689  T
Q  144 ttttccttctagctttagatcacgtaactctgccaag 180  Q
    ||||||  | || |||||||||| ||||||| |||||    
T  17418688 ttttccaccgaggtttagatcacctaactctaccaag 17418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 7098896 - 7099028
Alignment:
Q  44 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 143  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   |||    
T  7098896 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag 7098995  T
Q  144 ttttccttctagctttagatcacgtaactctgc 176  Q
     |||||| |||  ||||||||||||||||||||    
T  7098996 ctttcctcctaaatttagatcacgtaactctgc 7099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 7582349 - 7582284
Alignment:
Q  45 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 110  Q
    |||||||| |||||||||   ||||||||||||||||||||| ||||| ||| || | ||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataa 7582284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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