View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18020_low_19 (Length: 254)

Name: NF18020_low_19
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18020_low_19
NF18020_low_19
[»] chr3 (10 HSPs)
chr3 (9-238)||(23669168-23669397)
chr3 (9-238)||(24041444-24041673)
chr3 (116-201)||(41569168-41569253)
chr3 (115-201)||(51453114-51453200)
chr3 (9-80)||(23673587-23673658)
chr3 (9-80)||(24045863-24045934)
chr3 (9-68)||(23684709-23684768)
chr3 (9-68)||(24056946-24057005)
chr3 (115-167)||(23685025-23685077)
chr3 (115-167)||(24057262-24057314)
[»] chr4 (1 HSPs)
chr4 (115-201)||(34986586-34986672)
[»] chr7 (1 HSPs)
chr7 (115-201)||(21405656-21405742)
[»] chr2 (1 HSPs)
chr2 (115-199)||(24024265-24024349)
[»] chr8 (1 HSPs)
chr8 (9-109)||(35686311-35686413)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 23669168 - 23669397
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23669168 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 23669267  T
Q  109 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctaccaaggcccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23669268 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctaccaaggcccc 23669367  T
Q  209 ttcatatgaataagatctaagagaaataat 238  Q
    ||||||||||||||||||||||||||||||    
T  23669368 ttcatatgaataagatctaagagaaataat 23669397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 24041444 - 24041673
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24041444 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaaacaaggatatgttaaataagcaaatatt 24041543  T
Q  109 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctaccaaggcccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24041544 tactttgaaaataatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctaccaaggcccc 24041643  T
Q  209 ttcatatgaataagatctaagagaaataat 238  Q
    ||||||||||||||||||||||||||||||    
T  24041644 ttcatatgaataagatctaagagaaataat 24041673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 41569253 - 41569168
Alignment:
Q  116 aaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacca 201  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  41569253 aaaatgatgaatttactttgaaacaaggcaatgtcaataaaagactgtaagcgtgcattactgcattgtatttcaaactcctacca 41569168  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 51453200 - 51453114
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacca 201  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  51453200 gaaaatgatgaatttactttgaaacaagacaatttcaataaaacactctaagagtgcattagtgcattgtacttcaaactcctacca 51453114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 23673587 - 23673658
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa 80  Q
    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23673587 gaagaatatttacagaacgaagataattaagaccttgaagtaaccgaaataagagtttatgattagtaacaa 23673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 24045863 - 24045934
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa 80  Q
    ||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24045863 gaagaatatttacagaacgaagataattaagaccttgaagtaaccgaaataagagtttatgattagtaacaa 24045934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23684709 - 23684768
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttat 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23684709 gaagaatatttgcagaatgaagataattaagaccttgaagtaactgaaacaagagtttat 23684768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 24056946 - 24057005
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttat 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  24056946 gaagaatatttgcagaatgaagataattaagaccttgaagtaactgaaacaagagtttat 24057005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 23685025 - 23685077
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaaga 167  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  23685025 gaaaatgatgaatttactttgaaacaaggcagtgtcaataaaacactgtaaga 23685077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 24057262 - 24057314
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaaga 167  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  24057262 gaaaatgatgaatttactttgaaacaaggcagtgtcaataaaacactgtaaga 24057314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 34986672 - 34986586
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacca 201  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34986672 gaaaatgatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactgcattgtacttcaaactcctacca 34986586  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 21405656 - 21405742
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctacca 201  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  21405656 gaaaatgatgaatttactttgaaacaaggcaatgtcaataaaacactgtaagagtgcattactacattgtacttcaaactcctacca 21405742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 24024265 - 24024349
Alignment:
Q  115 gaaaataatgaatttactttgaaacaaggcaatgtcaataaaacattgtaagagtgcattactgcattgtacttcaaactcctac 199  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  24024265 gaaaatgatgaatttactttgaaacaagacaatgtcaataaaacactgtaagagtgcattactgcattgtactttaaactcctac 24024349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 35686413 - 35686311
Alignment:
Q  9 gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata 106  Q
    |||||| ||||||||| |||||||| || |||||| | |||| || ||||||||||||||||||||||||||  |||||||||||| || ||||||||||    
T  35686413 gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata 35686314  T
Q  107 ttt 109  Q
    |||    
T  35686313 ttt 35686311  T

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