View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_23 (Length: 237)
Name: NF18020_low_23
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36288948 - 36288728
Alignment:
| Q |
1 |
ttccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatata |
100 |
Q |
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| T |
36288948 |
ttccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagttggaaccttaccttatcactattttccaatgcttcatata |
36288849 |
T |
|
| Q |
101 |
caaaatacctttctccattatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaata |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288848 |
caaaatacctttctccagtatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaata |
36288749 |
T |
|
| Q |
201 |
accacttctccaccttctttt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36288748 |
accacttctccaccttctttt |
36288728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 14521763 - 14521803
Alignment:
| Q |
172 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
212 |
Q |
| |
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| T |
14521763 |
acaccggtaaaaaccctaccatcccaataaccacttctcca |
14521803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 12096672 - 12096773
Alignment:
| Q |
4 |
cattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaa |
103 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| || |
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| T |
12096672 |
cattctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaa |
12096771 |
T |
|
| Q |
104 |
aa |
105 |
Q |
| |
|
|| |
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|
| T |
12096772 |
aa |
12096773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 12096769 - 12096846
Alignment:
| Q |
144 |
aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccaccttctttt |
221 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096769 |
aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttctccaccttctttt |
12096846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 2700388 - 2700428
Alignment:
| Q |
172 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
212 |
Q |
| |
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||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
2700388 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
2700428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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