View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_27 (Length: 219)
Name: NF18020_low_27
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 29476964 - 29477126
Alignment:
| Q |
39 |
caaacaagtatgaacctaatacttccaaggccaatggaagcccggaagcataaattaatgctctgtttaaaagttctttgtaatttggatcaacaatgcc |
138 |
Q |
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| T |
29476964 |
caaacaagcttgaacctattacttccaaggccaatggaagcccggaagcataagttactgctcggtttaaaagttctgtgtaatttggatcaacaatgcc |
29477063 |
T |
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| Q |
139 |
ttgtttaaaaaccttgtggctaagcaaatcaagagcatctacgtcatttaacttttgtacttc |
201 |
Q |
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| T |
29477064 |
ttgtttaaaaaccttgtggctaagcaaatcaagagcatctacgtcatttaactcttgtacttc |
29477126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 28097353 - 28097413
Alignment:
| Q |
50 |
gaacctaatacttccaaggccaatggaagcccggaagcataaattaatgctctgtttaaaa |
110 |
Q |
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| T |
28097353 |
gaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaa |
28097413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 17662562 - 17662502
Alignment:
| Q |
31 |
acttttgtcaaacaagtatgaacctaatacttccaaggccaatggaagcccggaagcataa |
91 |
Q |
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| T |
17662562 |
acttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataa |
17662502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 17713588 - 17713528
Alignment:
| Q |
31 |
acttttgtcaaacaagtatgaacctaatacttccaaggccaatggaagcccggaagcataa |
91 |
Q |
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| T |
17713588 |
acttttgccaaacaagtgagaacctattacttccaaagccaatggaaggccagaagcataa |
17713528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 3280942 - 3280890
Alignment:
| Q |
39 |
caaacaagtatgaacctaatacttccaaggccaatggaagcccggaagcataa |
91 |
Q |
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| T |
3280942 |
caaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataa |
3280890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 16353855 - 16353906
Alignment:
| Q |
40 |
aaacaagtatgaacctaatacttccaaggccaatggaagcccggaagcataa |
91 |
Q |
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| T |
16353855 |
aaacaagttggaacctattacttccaaagccaatggaagcctggaagcataa |
16353906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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