View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_29 (Length: 204)
Name: NF18020_low_29
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 5391534 - 5391702
Alignment:
| Q |
22 |
acatgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctgg |
121 |
Q |
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| T |
5391534 |
acatgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctctgtgggcatgctgg |
5391633 |
T |
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| Q |
122 |
tccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
190 |
Q |
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| T |
5391634 |
tccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
5391702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 5395345 - 5395511
Alignment:
| Q |
22 |
acatgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctgg |
121 |
Q |
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| T |
5395345 |
acatggcaaagattgagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtaggcatgctgg |
5395444 |
T |
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| Q |
122 |
tccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttg |
188 |
Q |
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| T |
5395445 |
tccacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttttg |
5395511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 5401499 - 5401660
Alignment:
| Q |
29 |
aaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacga |
128 |
Q |
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||||||| ||| ||||||||| |||||| ||||||||||||| ||||| | ||| || || || || ||||||||||| ||||| ||||||||||||| |
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| T |
5401499 |
aaagatttggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacga |
5401598 |
T |
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| Q |
129 |
gacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
190 |
Q |
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||||||||| ||||| ||||| || ||||| || || |||||||||||||| || ||||||| |
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| T |
5401599 |
gacatagaatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgat |
5401660 |
T |
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