View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_4 (Length: 516)
Name: NF18020_low_4
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 30348658 - 30349005
Alignment:
| Q |
1 |
ttgtcatgacatatcatatttttcatacatcacatgcatgtggtaccatttcttcactaatttcccatccacgcttctagggtcttatctgatagaaaaa |
100 |
Q |
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| T |
30348658 |
ttgtcatgacatatcatatttttcatacatcacatgcatgtggtaccatttcttcactaatttcccatccacgcttctagggtcttatctgatagaaaaa |
30348757 |
T |
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| Q |
101 |
caaaacatacgactttatttatttttgaaatattcatttccgtgtactatgcttatactttatggtcaaatttatttttccaagctcgtgaaaagaatct |
200 |
Q |
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| T |
30348758 |
caaaacatacgactttatttatttttgaaatattcatttccgtgtactatgcttatactttatggtcaaatttatttttccaagctcgtgaaaagaatct |
30348857 |
T |
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| Q |
201 |
atgttcatcatacacacatataatcgttttgtaaaggcctgttcatcatcatattcaaacattttatcgactg-aaaagcaatgtacacgtaattaagta |
299 |
Q |
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| T |
30348858 |
atgttcatcatacacacatataatcattttgtaaaggcttgttcatcatcatattcaaacattttatcgactgaaaaagcaatgtacacgtaattaagta |
30348957 |
T |
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| Q |
300 |
ctagtnnnnnnnnnnntgttactaaggttaattttgaattattatgaa |
347 |
Q |
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| T |
30348958 |
ctagtaaaaaaaaaattgttactaaggttaattttgaattattatgaa |
30349005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 339 - 506
Target Start/End: Original strand, 30349411 - 30349577
Alignment:
| Q |
339 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataatnnnnnnntgtgaacaag |
438 |
Q |
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| T |
30349411 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataat-aaaaaatgtgaacaag |
30349509 |
T |
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| Q |
439 |
aataagagaatagaacattaatcagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
506 |
Q |
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| T |
30349510 |
aataagagaatagaacattaataagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
30349577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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