View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_5 (Length: 514)
Name: NF18020_low_5
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 31241398 - 31241222
Alignment:
| Q |
18 |
agatgttggtcctctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaaaatggca |
117 |
Q |
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| T |
31241398 |
agatgttggtcctctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaaaatggca |
31241299 |
T |
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| Q |
118 |
tgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatcatcaa |
194 |
Q |
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| T |
31241298 |
tgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatcatcaa |
31241222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 31232415 - 31232234
Alignment:
| Q |
30 |
tctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaaaatggcatgagttggagga |
129 |
Q |
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| T |
31232415 |
tctaattcattttaattggtgttataccatttctaatttgt-agagctatatagacaaattggttggagaagcatacacaaaatggcatgagttggagga |
31232317 |
T |
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| Q |
130 |
aattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatcatcaatgacttttgttctcaata |
212 |
Q |
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| T |
31232316 |
aattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaaccatcaatgacttctgttctcaata |
31232234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 512
Target Start/End: Complemental strand, 31232185 - 31231928
Alignment:
| Q |
268 |
atagaaataagttcatatactcatgttgattggcttcgtagcaccacacaagatatgttgtactggataacaatccatgtattcatgtagtcggcatgtt |
367 |
Q |
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| T |
31232185 |
atagaaataagatcatatactcatactggttg-ctacgtagcaccatacaagacctgttgtagtggataacaatcgatatatttacgtagttggcatgtt |
31232087 |
T |
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| Q |
368 |
agtgatcgttg-----tgatcaaatgacttagaatttaaactcgac--atttcatttttaaaaatat-caaaatatatatcaaaattttaat------cg |
453 |
Q |
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| T |
31232086 |
ggtgatcgttgaattgtgattggatgacttagtttttgaactcaccgcatttcatttaaaaaaaaattcaaaatgtatatcaaaattttaattttaatcg |
31231987 |
T |
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| Q |
454 |
atcatctgatctcaatttaatcttaaccgatgtgaccaatatgttgaatgtgtgaattt |
512 |
Q |
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| T |
31231986 |
atcgtctgatctcaattcaaccttaaccgttatgaccagtatgttgaatgtgtgaattt |
31231928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 31208936 - 31208868
Alignment:
| Q |
122 |
ttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatcatcaa |
194 |
Q |
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| T |
31208936 |
ttggacgaagttgatgggattttaaatgataacattgcttt----ccataaggtattttcaattaatcatcaa |
31208868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 44029976 - 44030054
Alignment:
| Q |
112 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatca |
190 |
Q |
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| T |
44029976 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatgttcaaataatca |
44030054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 44016603 - 44016525
Alignment:
| Q |
112 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatca |
190 |
Q |
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| T |
44016603 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatattctaataatca |
44016525 |
T |
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