View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_6 (Length: 432)
Name: NF18020_low_6
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 42287417 - 42286993
Alignment:
| Q |
1 |
ttgtaggaaaactagttcgattaagtgaagaaacatcaagaattggtgaaacaacctcagcagatggtaacgtggtgaagaga---------gtgagaat |
91 |
Q |
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| T |
42287417 |
ttgtaggaaaactagttcgattaagtgaagaaacatcaagaattggtgaaacaacctcagcagatggtaacgtggtgaagagattgaagagagtgagaat |
42287318 |
T |
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| Q |
92 |
taaaaaggctctgaataatttcatattcagagccatgaatgaaaaactaattgactattgtgcttgatccattgaaaatatggttccttttataatttat |
191 |
Q |
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| T |
42287317 |
taaaaaggctctgaataatttcatattcagagccatgaatgaaaaactaattgactattgtgcttgatccattgaaaatatggttccttttataatttat |
42287218 |
T |
|
| Q |
192 |
atttagagccaaatatagagaaaaattggtgtaggctgtatttgtctatatttgtctgtagctacaatcctacagataaaattggtgttaattgttaaga |
291 |
Q |
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| T |
42287217 |
atttagagccaaatatagagaaaaattggtgtaggctgtatttgtctatatttgtctgtagctacaa-cctacagataaaattggtgttaattgttaaga |
42287119 |
T |
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| Q |
292 |
aactgacaaatatagaacctcacaaacaatcatgatttttaaatggataatctattaaagtattcactattctcaacactaatcatctttcataatattt |
391 |
Q |
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| T |
42287118 |
aactgacaaatatagaacctcacaaacaatcatgatttttaaatggataatctattaaagtatgcactattctcaacactaataatctttcataatattt |
42287019 |
T |
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| Q |
392 |
tagaggccctcattcataattttgat |
417 |
Q |
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| T |
42287018 |
tagaggccctcattcataattttgat |
42286993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 42169885 - 42169989
Alignment:
| Q |
6 |
ggaaaactagttcgattaagtgaagaaacatcaagaattggtgaaacaacctcagcagatggtaacgtggtgaagagagtgagaattaaaaaggctctga |
105 |
Q |
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| T |
42169885 |
ggaaagctagttcgattgagtgaggaaacatcaagaattggtgaaacaacctctgcaaatgatagtgtgatgaagagagtgagaatgaaaagctctctga |
42169984 |
T |
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| Q |
106 |
ataat |
110 |
Q |
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||||| |
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| T |
42169985 |
ataat |
42169989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42159710 - 42159767
Alignment:
| Q |
1 |
ttgtaggaaaactagttcgattaagtgaagaaacatcaagaattggtgaaacaacctc |
58 |
Q |
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| T |
42159710 |
ttgtgggaaaactagttcgattaagtgaagaaacatcaagaattggtgaaacagcctc |
42159767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42159964 - 42160023
Alignment:
| Q |
201 |
caaatatagag--aaaaattggtgtaggctgtatttgtctatatttgtctgtagctacaa |
258 |
Q |
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| T |
42159964 |
caaatatagagccaaaaattggtgtaggttgtattcgtctatatttatctgtagctacaa |
42160023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 42159862 - 42159921
Alignment:
| Q |
165 |
gaaaatatggttccttttataattta-tatttagagccaaatatagagaaaaattggtgt |
223 |
Q |
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| T |
42159862 |
gaaagtattgttccttttatgattaaatatttagagccaaatatagagaaaaattggtgt |
42159921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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