View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18020_low_8 (Length: 395)
Name: NF18020_low_8
Description: NF18020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18020_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 1332108 - 1332310
Alignment:
| Q |
16 |
agtaacttgaattttcttgaaaaacaataaatcaaaagcatcacaattgtttattcaa--------catgacacaggcacaatttgggaaagatattaaa |
107 |
Q |
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| T |
1332108 |
agtaacttgaattttcttgaaaaacaataaatcaaaagcatcacaattgtttattcaattttataacatgacacaggcacaatttgggaaagatattaaa |
1332207 |
T |
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| Q |
108 |
ataatatgtcgacacaatggtaaataacatgtcaatcataacctttccaactttatcagtaaaaagagcatcattcatgaatttacacgtgttgacatcc |
207 |
Q |
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| T |
1332208 |
ataatatgtcgacacaatggtaaataacatgtcaatcataacatttccaactttatcagtaaaaagagcatcattcatgaatttacacatgttgacatcc |
1332307 |
T |
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| Q |
208 |
gtc |
210 |
Q |
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||| |
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| T |
1332308 |
gtc |
1332310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 1332340 - 1332485
Alignment:
| Q |
241 |
tgatcatttatttgaagttgctcgagctcttttctttcacgaaaatatgtcttacttcactcgttctcaacctcatgtggagggtatgtgtgctccgact |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1332340 |
tgatcatttatttgaagttgctcgagctcttttctttcatgaaaatatgtcttacttcactcgtcctcaacctcatgtggagggtatgtgtgctccgact |
1332439 |
T |
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| Q |
341 |
ttgagttcctaaaccttggtcatagcttccctaaaacacctgtctc |
386 |
Q |
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| T |
1332440 |
ttgagttcctaaaccctggtcatagcttccctaaaacacctgtctc |
1332485 |
T |
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