View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_10 (Length: 493)
Name: NF18021_high_10
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 4382915 - 4383187
Alignment:
| Q |
11 |
atgaatggagaacaattgacacggaaggatggtaacttaatcatctccaatgctattgaaaatggggagaggaagatcaacaaacaaacttgacaagtag |
110 |
Q |
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| T |
4382915 |
atgaatggagaacaattgacacggaaggatggtaacttaatcatctccaatgctattgaaaatggggagaggaagatcaacaaacaaacttgacaagtag |
4383014 |
T |
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| Q |
111 |
ttccatatcagattcagactcataaagccttgcgtggtgacagcgtcgtgatggtaattagcagttgttcttgttcgaactcccttattattattaatat |
210 |
Q |
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| T |
4383015 |
ttccatatcagattcagactcgtaaagccttgcgtggtgacagcgtcatgatggtaattagcatttgtttttgttcgaactcccttattattattaatat |
4383114 |
T |
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| Q |
211 |
ttggacccacgatgtatggatggtaatttatatttgcgttggttttattttatatattgattctaacctaagt |
283 |
Q |
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| T |
4383115 |
ttggacccacgatgtaacgatggtaatttatatttgcgtaggttttattctatatattgattctaacctaagt |
4383187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 4112351 - 4112282
Alignment:
| Q |
39 |
atggtaacttaatcatctccaatgctattgaaaatggggagaggaagatcaacaaacaaacttgacaagt |
108 |
Q |
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| T |
4112351 |
atggtagcttaatcatctccaattttattgaaaatggggtgaggaagatcaagaaacaaacttgacaagt |
4112282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 4111659 - 4111615
Alignment:
| Q |
435 |
cactgtgtccgaacctagttgtttgatatgaagatgaagattgtg |
479 |
Q |
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| T |
4111659 |
cactgtgtccgaacctagttgtttgatatgaagatgaagattgtg |
4111615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 4112263 - 4112190
Alignment:
| Q |
232 |
ggtaatttatatttgcgttggttttattttatatattgattctaacctaagtccctgagggtgaaggttttaattgtg |
309 |
Q |
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| T |
4112263 |
ggtaatttatatttgtgtaggttttattttatat----attctaacctaaatccctaaggatgaaggttttatttgtg |
4112190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 4768325 - 4768359
Alignment:
| Q |
435 |
cactgtgtccgaacctagttgtttgatatgaagat |
469 |
Q |
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| T |
4768325 |
cactgtgtccggacctagttgtttgatatgaagat |
4768359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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