View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_high_14 (Length: 439)

Name: NF18021_high_14
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_high_14
NF18021_high_14
[»] chr6 (13 HSPs)
chr6 (58-390)||(2438800-2439156)
chr6 (221-390)||(3676331-3676505)
chr6 (267-374)||(2537059-2537169)
chr6 (267-353)||(16316657-16316743)
chr6 (267-339)||(10927869-10927941)
chr6 (267-338)||(27901260-27901331)
chr6 (270-344)||(32249936-32250010)
chr6 (230-300)||(17590000-17590070)
chr6 (267-317)||(23915527-23915577)
chr6 (331-390)||(3676767-3676831)
chr6 (258-300)||(17589948-17589990)
chr6 (223-268)||(10927743-10927788)
chr6 (221-262)||(35219457-35219498)
[»] chr3 (21 HSPs)
chr3 (221-326)||(22176437-22176542)
chr3 (221-326)||(22101492-22101597)
chr3 (267-374)||(44822221-44822331)
chr3 (267-390)||(22101929-22102057)
chr3 (269-344)||(53359493-53359568)
chr3 (267-332)||(35863689-35863754)
chr3 (267-374)||(28096290-28096400)
chr3 (267-339)||(35369078-35369150)
chr3 (267-344)||(22176876-22176953)
chr3 (271-344)||(22833299-22833372)
chr3 (267-344)||(7115968-7116045)
chr3 (271-329)||(7116577-7116635)
chr3 (272-338)||(34492078-34492144)
chr3 (271-339)||(3422631-3422699)
chr3 (221-261)||(3422811-3422851)
chr3 (221-260)||(22101801-22101840)
chr3 (230-267)||(42897030-42897067)
chr3 (221-261)||(3424693-3424733)
chr3 (221-261)||(35368936-35368976)
chr3 (221-257)||(44822079-44822115)
chr3 (221-257)||(51139766-51139802)
[»] chr5 (12 HSPs)
chr5 (221-374)||(28221965-28222120)
chr5 (267-374)||(28263786-28263896)
chr5 (224-337)||(3160861-3160973)
chr5 (267-339)||(1190401-1190473)
chr5 (292-337)||(3160809-3160854)
chr5 (221-262)||(38938772-38938813)
chr5 (221-268)||(28766093-28766140)
chr5 (214-268)||(7464327-7464381)
chr5 (214-268)||(39850686-39850740)
chr5 (292-337)||(3160756-3160801)
chr5 (228-261)||(38939034-38939067)
chr5 (221-261)||(1190255-1190295)
[»] chr4 (20 HSPs)
chr4 (253-374)||(11974680-11974804)
chr4 (267-374)||(44814511-44814621)
chr4 (271-374)||(3729490-3729596)
chr4 (221-300)||(11974809-11974888)
chr4 (267-339)||(54198299-54198370)
chr4 (271-342)||(38001454-38001525)
chr4 (269-374)||(9162593-9162701)
chr4 (268-339)||(44673273-44673344)
chr4 (270-374)||(5525027-5525132)
chr4 (266-344)||(12216960-12217038)
chr4 (230-289)||(33728869-33728928)
chr4 (230-268)||(2291288-2291326)
chr4 (222-268)||(9162916-9162962)
chr4 (221-262)||(49358018-49358059)
chr4 (224-261)||(54198471-54198508)
chr4 (272-374)||(10726370-10726475)
chr4 (272-374)||(10940139-10940244)
chr4 (221-268)||(44814376-44814423)
chr4 (221-262)||(11064724-11064765)
chr4 (221-257)||(5524881-5524917)
[»] chr7 (15 HSPs)
chr7 (221-339)||(9329647-9329764)
chr7 (267-339)||(11321279-11321351)
chr7 (267-338)||(41755438-41755509)
chr7 (267-374)||(35492178-35492287)
chr7 (267-344)||(47221000-47221077)
chr7 (271-374)||(20621218-20621324)
chr7 (267-344)||(9307724-9307799)
chr7 (274-337)||(9302210-9302273)
chr7 (274-337)||(9306648-9306711)
chr7 (224-261)||(45022631-45022668)
chr7 (311-344)||(9303286-9303319)
chr7 (221-261)||(9302059-9302099)
chr7 (221-261)||(9306497-9306537)
chr7 (221-261)||(11321451-11321491)
chr7 (221-257)||(47220854-47220890)
[»] chr1 (16 HSPs)
chr1 (271-374)||(14494798-14494902)
chr1 (267-374)||(237176-237284)
chr1 (267-336)||(29699187-29699256)
chr1 (267-339)||(50231531-50231603)
chr1 (267-335)||(8528219-8528287)
chr1 (267-368)||(9041223-9041327)
chr1 (280-344)||(20133038-20133102)
chr1 (286-338)||(43575210-43575262)
chr1 (274-344)||(14245889-14245959)
chr1 (221-268)||(24162672-24162719)
chr1 (221-268)||(43577183-43577230)
chr1 (221-268)||(50231398-50231445)
chr1 (267-333)||(49265943-49266009)
chr1 (267-300)||(9046387-9046420)
chr1 (224-268)||(14245797-14245841)
chr1 (221-257)||(14494661-14494697)
[»] chr2 (16 HSPs)
chr2 (222-379)||(44972992-44973148)
chr2 (271-344)||(35193434-35193507)
chr2 (267-344)||(309848-309925)
chr2 (271-424)||(7061867-7062025)
chr2 (271-344)||(43528444-43528517)
chr2 (267-338)||(44539531-44539602)
chr2 (267-344)||(13594515-13594592)
chr2 (221-268)||(19901609-19901656)
chr2 (267-318)||(25047962-25048013)
chr2 (221-257)||(44539702-44539738)
chr2 (221-268)||(7061734-7061781)
chr2 (221-268)||(21956532-21956579)
chr2 (214-268)||(8063236-8063290)
chr2 (286-328)||(27339513-27339555)
chr2 (215-257)||(43528298-43528340)
chr2 (221-257)||(2221938-2221974)
[»] scaffold0066 (2 HSPs)
scaffold0066 (269-374)||(56467-56575)
scaffold0066 (221-262)||(56333-56374)
[»] chr8 (5 HSPs)
chr8 (267-336)||(24432233-24432302)
chr8 (271-344)||(5592692-5592765)
chr8 (222-268)||(32889059-32889105)
chr8 (214-257)||(26528069-26528112)
chr8 (221-261)||(32889177-32889217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (267-344)||(3490-3567)
[»] scaffold0123 (1 HSPs)
scaffold0123 (270-390)||(17180-17305)
[»] scaffold0086 (1 HSPs)
scaffold0086 (214-268)||(48321-48376)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 58 - 390
Target Start/End: Complemental strand, 2439156 - 2438800
Alignment:
Q  58 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaattatttcaggacatgtagaccattcataaggcttcatgtt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  2439156 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaatt---tcaggacatgtagaccattcataaggcttcatgtt 2439060  T
Q  158 tgtttgtacatttataatgcactaaacacactattcatctatatcta-------------gaaaactaccattttc-----------gggttgaactttt 233  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||             |||||||| |||||||           |||||||||||||    
T  2439059 tgtttgaacatttataatgcactaaacacactattcatctatatctatactatatataaagaaaactatcattttcagcatacttttgggttgaactttt 2438960  T
Q  234 ctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 333  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438959 ctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 2438860  T
Q  334 tacctctgttatccaaagat-actcacaaaaaactaacac--aacaaaatttcatgttac 390  Q
    |||||||||||||||||||| |  | ||||||||||||||  ||||||||||||||||||    
T  2438859 tacctctgttatccaaagatcaaactcaaaaaactaacacaaaacaaaatttcatgttac 2438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 221 - 390
Target Start/End: Original strand, 3676331 - 3676505
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 320  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||     
T  3676331 gggttggacttttcttcccaaaaatacccttaattttaaatacaaatagtcaattatacaataacacgtggattagtaatccatatcactaatcgtccct 3676430  T
Q  321 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 390  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676431 gttaaccctcttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 2537059 - 2537169
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||| |||| ||| ||||   ||||||||||    
T  2537059 tagccaattataaaataacacgtgggttactaatccatgtcactaatcgtccccgttaaccctattttacctccgttaaccacagatcaaactcacaaaa 2537158  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  2537159 aactagcacaa 2537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 16316743 - 16316657
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat 353  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  16316743 tagctaattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctatgttaaccatagat 16316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 10927869 - 10927941
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  10927869 tagccaattataaaataacacgtggattactaatccatgtcaataatcgtcctcgttaaccctcttttacctc 10927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 27901331 - 27901260
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 338  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||||||||||||||||||||    
T  27901331 tagccaattataaaataacacatggattactaatccatgttactgatcgtccccgttaaccctcttttacct 27901260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 32250010 - 32249936
Alignment:
Q  270 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||| | ||||||| ||||||||||||||||    
T  32250010 ccaattataaaataacacgtagattactaatccatgtcactaatcgtctctgttaaccatcttttacctctgtta 32249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 17590070 - 17590000
Alignment:
Q  230 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 300  Q
    ||||||||| ||||||||| |||||||||| || ||||| |  |||| |||||||||||||||||||||||    
T  17590070 ttttctttccaaaaataccattaattttaattacaaataactcattacaaaataacacgtggattagtaat 17590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 23915577 - 23915527
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtc 317  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  23915577 tagccaattataaaataacacgtggattactaatctatgtcactaatcgtc 23915527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 390
Target Start/End: Original strand, 3676767 - 3676831
Alignment:
Q  331 ttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 390  Q
    |||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676767 ttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 17589990 - 17589948
Alignment:
Q  258 aaatataaatagccaattataaaataacacgtggattagtaat 300  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  17589990 aaatacaaatagccaattataaattaacacgtggattagtaat 17589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 10927743 - 10927788
Alignment:
Q  223 gttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10927743 gttgaaattttctttccaaaaatactcttaattttaaatataaata 10927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 35219498 - 35219457
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaata 262  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  35219498 gggttggacttttctttccaaaaatacccttaattttaaata 35219457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 22176437 - 22176542
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 320  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  22176437 gggttgaacttttcttttcaaaaatacccttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtccac 22176536  T
Q  321 gttaac 326  Q
    ||||||    
T  22176537 gttaac 22176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 22101492 - 22101597
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 320  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  22101492 gggttgaacttttcttttcaaaaatacctttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtcaac 22101591  T
Q  321 gttaac 326  Q
    ||||||    
T  22101592 gttaac 22101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 44822221 - 44822331
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||   ||| ||||||    
T  44822221 tagccaattataaaacaacacatggattactaattcatgtcactaatcgtccccgttaaccctcttttacatctgttaaccaaagatcaaacttacaaaa 44822320  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  44822321 aactagcacaa 44822331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 22101929 - 22102057
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||| ||| | ||   ||||||||||    
T  22101929 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccctcttttacctccgttaaccacaaatcaaactcacaaaa 22102028  T
Q  364 aactaacac--aacaaaatttcatgttac 390  Q
    ||||| |||  |||||||  |||||||||    
T  22102029 aactagcactaaacaaaaagtcatgttac 22102057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 53359493 - 53359568
Alignment:
Q  269 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53359493 gccaattataaaatagcacgtgaattattaattcatgtcactaatcatccccgttaaccctcttttacctccgtta 53359568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 35863754 - 35863689
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctt 332  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  35863754 tagccaattataaaataacacgtggattactaatccatgtcactaatcgtccccgttaaccatctt 35863689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 28096290 - 28096400
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||||  || ||||   ||||||||||    
T  28096290 tagccaattataaaataacatgttgattactaatccatgtcactaatcgtcctcgttaaccctcttttccctccgttaatcacagatcaaactcacaaaa 28096389  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  28096390 aactagcacaa 28096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 35369078 - 35369150
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||    
T  35369078 tagccaattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccatcttttacctc 35369150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 22176876 - 22176953
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  22176876 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaacccttttttacctccgtta 22176953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 22833299 - 22833372
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  22833299 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 22833372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 7116045 - 7115968
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||| ||||||||||||||||||| |||| || | ||||| |||||| ||||||||||| ||||||||||||| ||||    
T  7116045 tagcaaattataaaataacacgtgtattactagtccatgttactaattgtccccgttaatcctcttttacctccgtta 7115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 7116635 - 7116577
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccct 329  Q
    |||||||||||||||||||| |||| | ||||||||||||||| ||||| |||||||||    
T  7116635 caattataaaataacacgtgaattaatgattcatgtcactaattgtcccggttaaccct 7116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 34492078 - 34492144
Alignment:
Q  272 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 338  Q
    ||||||||||||||||||| |||| |||| |||||||||||| ||  |||||||| |||||||||||    
T  34492078 aattataaaataacacgtgaattactaatccatgtcactaatagtttccgttaactctcttttacct 34492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 3422699 - 3422631
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    |||||||||| ||||| |||||||| |||| ||||||  ||||||| ||||||| ||||||||||||||    
T  3422699 caattataaagtaacatgtggattattaatccatgtctttaatcgtacccgttatccctcttttacctc 3422631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 3422851 - 3422811
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  3422851 gggttggacttttctttccaaaaatacccttaattttaaat 3422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 22101801 - 22101840
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaa 260  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22101801 gggttgaacttttcttttcaaaaatacccttaattttaaa 22101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 42897067 - 42897030
Alignment:
Q  230 ttttctttcaaaaaatacccttaattttaaatataaat 267  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  42897067 ttttctttccaaaaatacccttaattttaaatacaaat 42897030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 3424733 - 3424693
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  3424733 gggttggacttttatttccaaaaatacccttaattttaaat 3424693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 35368936 - 35368976
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  35368936 gggttggacttttctttccaaaaatacccttgattttaaat 35368976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 44822079 - 44822115
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  44822079 gggttgaacatttctttccaaaaatacccttaatttt 44822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 51139802 - 51139766
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||||||||||||||  ||||||||||||||||||    
T  51139802 gggttgaacttttcttttcaaaaatacccttaatttt 51139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 221 - 374
Target Start/End: Original strand, 28221965 - 28222120
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 320  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||  ||  |     
T  28221965 gggttggacttttctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacatgtggattagtaatccatgtcactaactgt-act 28222063  T
Q  321 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaactaacacaa 374  Q
    ||||||||||||||||||  |||| ||||||||   ||||||||||||||| |||||    
T  28222064 gttaaccctcttttaccttcgttaaccaaagatcaaactcacaaaaaactagcacaa 28222120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 28263896 - 28263786
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||   ||||||||||    
T  28263896 tagccaattataaaataacacgtggattactaattcatgtcactaatcgtccccgttaactctcttttacctctgttaaccacatatcaaactcacaaaa 28263797  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  28263796 aactagcacaa 28263786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 3160973 - 3160861
Alignment:
Q  224 ttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgtt 323  Q
    ||||||||||||||| |||| ||||||||||||| |||| || ||  |||||||||||||||| ||| ||||||||| ||| |||||||||  | |||||    
T  3160973 ttgaacttttctttccaaaa-tacccttaattttgaatacaattaatcaattataaaataacatgtgaattagtaatccatatcactaatcagctccgtt 3160875  T
Q  324 aaccctcttttacc 337  Q
    ||||||||||||||    
T  3160874 aaccctcttttacc 3160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 1190401 - 1190473
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||| || |||| |||| |||||||  |||||||||||||||||||||||||||||    
T  1190401 tagccaattataaaataacacatgaattactaatccatgtcaacaatcgtccccgttaaccctcttttacctc 1190473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 3160854 - 3160809
Alignment:
Q  292 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 337  Q
    |||| |||||||||||||||||| || |||||||||||||||||||    
T  3160854 attaataattcatgtcactaatcatctccgttaaccctcttttacc 3160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 38938813 - 38938772
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaata 262  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  38938813 gggttggacttttctttccaaaaatacccttaattttaaata 38938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 28766093 - 28766140
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  28766093 gggttgaatttttctttccaaaaatacccttaatttttaatacaaata 28766140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 7464381 - 7464327
Alignment:
Q  214 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| |||||||||||||||||| ||||||||| | |||||| |||| |||||    
T  7464381 catttttgggttgaacttttctttccaaaaataccttcaattttcaatacaaata 7464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 39850686 - 39850740
Alignment:
Q  214 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| |||||| |||||||||||||||||||| || |||||| |||| |||||    
T  39850686 catttttgggttggacttttctttcaaaaaatactctcaattttcaatagaaata 39850740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 3160801 - 3160756
Alignment:
Q  292 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 337  Q
    ||||||||| ||||||||||||| || | |||||||||||||||||    
T  3160801 attagtaatccatgtcactaatcatctctgttaaccctcttttacc 3160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 38939067 - 38939034
Alignment:
Q  228 acttttctttcaaaaaatacccttaattttaaat 261  Q
    ||||||||||| ||||||||||||||||||||||    
T  38939067 acttttctttccaaaaatacccttaattttaaat 38939034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 1190255 - 1190295
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  1190255 gggttggaattttctttccaaaaatacccttaattttaaat 1190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 11974804 - 11974680
Alignment:
Q  253 attttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaaga 352  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |||||||    
T  11974804 attttaaatacaaatagccaattataaaataacacatggattagtaattcatgccactaatcgtctccgttaactctcttttacctccgttaaccaaaga 11974705  T
Q  353 t---actcacaaaaaactaacacaa 374  Q
    |   ||||||||||||||| |||||    
T  11974704 tcaaactcacaaaaaactagcacaa 11974680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 44814511 - 44814621
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||| ||| ||||   ||||||||||    
T  44814511 tagccaattataaaataacacgtagattactaatctatgtcactaattgtccccgttaaccctcttttacctccgttaaccatagatcaaactcacaaaa 44814610  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  44814611 aactagcacaa 44814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 3729490 - 3729596
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 367  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||| ||| ||||   ||||||||||||||    
T  3729490 caattataaaataacatgtggattactaatacatgtcactaatcgtccatgttaaccctcttttacctccgttaaccatagatcaaactcacaaaaaact 3729589  T
Q  368 aacacaa 374  Q
    | |||||    
T  3729590 agcacaa 3729596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 11974888 - 11974809
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 300  Q
    |||||||||||||||||   ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  11974888 gggttgaacttttcttttccaaaatacccttaattttaattacaaatagccaattacaaaataacacgtggattagtaat 11974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 54198370 - 54198299
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||    
T  54198370 tagccaattataaaataacacgtggattactaatccatgtcactaatcat-cccgttaaccctcttttacctc 54198299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 38001454 - 38001525
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgt 342  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||    
T  38001454 caattataaaataacacatggattactaatccatgtcactaatcatccccgttaaccctattttacctctgt 38001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 9162701 - 9162593
Alignment:
Q  269 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 365  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||| || |||| ||| | ||   ||||||||||||    
T  9162701 gccaattataaaataacacgtggattaataatccatgtcattaatcttccacgttaaccctcttttacatccgttaaccacaaatcaaactcacaaaaaa 9162602  T
Q  366 ctaacacaa 374  Q
    ||| |||||    
T  9162601 ctagcacaa 9162593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 44673344 - 44673273
Alignment:
Q  268 agccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    |||||||||||| |||||||||| |||| ||||||| ||||||||| || ||||||||||||||||||||||    
T  44673344 agccaattataagataacacgtgaattactaattcacgtcactaattgttcccgttaaccctcttttacctc 44673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 5525027 - 5525132
Alignment:
Q  270 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 366  Q
    ||||||||||||||||| || ||||| |||| |||||||||  |||||||||||||| |||||||||||| |||| ||| | ||   |||||||||||||    
T  5525027 ccaattataaaataacaagtagattactaatccatgtcact--tcgtccccgttaactctcttttacctccgttaaccacaaatcaaactcacaaaaaac 5525124  T
Q  367 taacacaa 374  Q
    || |||||    
T  5525125 tagcacaa 5525132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 12216960 - 12217038
Alignment:
Q  266 atagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| || |  |||||||||||||||||| |||||    
T  12216960 atagccaattataaaataacatgtggattactaatccatgtcagtaattgttcttgttaaccctcttttacctatgtta 12217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 33728869 - 33728928
Alignment:
Q  230 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgt 289  Q
    ||||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  33728869 ttttcttttcaaaaatatccttaattttaaatacaaatagtcaattataaaataacacgt 33728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 2291326 - 2291288
Alignment:
Q  230 ttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2291326 ttttctttcaaaaaatacccttaattttcaatataaata 2291288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 9162962 - 9162916
Alignment:
Q  222 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  9162962 ggttggacttttctttccaaaaatacccttaattttaaatacaaata 9162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 49358018 - 49358059
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaata 262  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  49358018 gggttggacttttctttccaaaaatacccttaattttaaata 49358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 54198508 - 54198471
Alignment:
Q  224 ttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54198508 ttgaacttttctttccaaaaatacccttaattttaaat 54198471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 374
Target Start/End: Original strand, 10726370 - 10726475
Alignment:
Q  272 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 368  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10726370 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10726469  T
Q  369 acacaa 374  Q
     |||||    
T  10726470 gcacaa 10726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 374
Target Start/End: Original strand, 10940139 - 10940244
Alignment:
Q  272 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 368  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10940139 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10940238  T
Q  369 acacaa 374  Q
     |||||    
T  10940239 gcacaa 10940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 44814376 - 44814423
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  44814376 gggtagaacttttctttccaaaaatacccttaattttaattttaaata 44814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 11064765 - 11064724
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaata 262  Q
    |||||| ||||||||||| |||||||||||||||||| ||||    
T  11064765 gggttggacttttctttccaaaaatacccttaattttcaata 11064724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 5524881 - 5524917
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  5524881 gggttgtacttttctttccaaaaatacccttaatttt 5524917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 9329647 - 9329764
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 320  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || |     
T  9329647 gggttggatttttctttcaaaa-atacccttaattttaaatataaatagacaattataaaataacatgtggattagtaatccatgtcattaatcatctct 9329745  T
Q  321 gttaaccctcttttacctc 339  Q
    ||||  |||||||||||||    
T  9329746 gttagacctcttttacctc 9329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 11321351 - 11321279
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11321351 tagccaattataaaataacacatgaattactaattcatgtcactaatcgtccccattaaccctcttttacctc 11321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 41755509 - 41755438
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 338  Q
    ||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41755509 tagccaattgtaaaataacatgtggattactaattcatgtcaccaatcgtccccgttaaccctcttttacct 41755438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 35492178 - 35492287
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||    |||||||||    
T  35492178 tagccaattataaaataacatgtggattactaattcatgtcactaatcatcctcgttaaccct-ttttacctccgttaaccatagatcaagctcacaaaa 35492276  T
Q  364 aactaacacaa 374  Q
    ||||| |||||    
T  35492277 aactagcacaa 35492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 47221000 - 47221077
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  47221000 tagccagttataaaataacacgtgaattactaattcatgtcactaattgtcccagctaaccctcttttacctccgtta 47221077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 20621324 - 20621218
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 367  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||||||||  ||||||||||| |||| ||| | ||   ||||||||||||||    
T  20621324 caattataaaataacaagtagattactaatccatgtcactaatcgtccccgttaactttcttttacctccgttaaccacaaatcaaactcacaaaaaact 20621225  T
Q  368 aacacaa 374  Q
    | |||||    
T  20621224 agcacaa 20621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 9307799 - 9307724
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  9307799 tagccaatt-taaaatagcacgtgcattactaatccatgtcacta-tcgtccccgttaaccctcttttacctccgtta 9307724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 9302210 - 9302273
Alignment:
Q  274 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 337  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9302210 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9302273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 9306648 - 9306711
Alignment:
Q  274 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 337  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9306648 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9306711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 45022668 - 45022631
Alignment:
Q  224 ttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45022668 ttgaacttttctttcaaaaaatacctttaattttaaat 45022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 9303319 - 9303286
Alignment:
Q  311 aatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||||||||||||||||||||||| ||||    
T  9303319 aatcgtccccgttaaccctcttttacctccgtta 9303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 9302059 - 9302099
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9302059 gggttggacttttcttttcaaaaatacccttaattttaaat 9302099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 9306497 - 9306537
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9306497 gggttggacttttcttttcaaaaatacccttaattttaaat 9306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 11321491 - 11321451
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  11321491 gggttggacttttctttccaaaactacccttaattttaaat 11321451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 47220854 - 47220890
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  47220854 gggttaaacttttctttccaaaaatacccttaatttt 47220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 14494798 - 14494902
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatcca-aagatactcacaaaaaactaa 369  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||||     
T  14494798 caattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctctgttaaccacatcaaactcacaaaaaactag 14494897  T
Q  370 cacaa 374  Q
    |||||    
T  14494898 cacaa 14494902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 237176 - 237284
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat--actcacaaaaa 364  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||| || |||||||||||||||||| |||| ||| ||||  | |||||||||    
T  237176 tagccaattataaaataacacgtg-attactaatccatgtcactaatcgtctcctttaaccctcttttacctccgttaaccatagatcaaatcacaaaaa 237274  T
Q  365 actaacacaa 374  Q
    |||| |||||    
T  237275 actagcacaa 237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 29699256 - 29699187
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 336  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  29699256 tagccaattataaaataacacgtggattactaatccatgtcactgatcgtccccgttaaccatcttttac 29699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 50231531 - 50231603
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 339  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||||    
T  50231531 tagccaattataaaataacacgtggattactaatccatgtcaataatcgttcccgttaaccctctttttcctc 50231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 8528219 - 8528287
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctttta 335  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  8528219 tagccaattataaaataacacgtggattactaatccatgtcaatgatcgtccctgttaaccctctttta 8528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 9041223 - 9041327
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 363  Q
    |||||||||||||||||| ||||| |||  |||| ||||||| |||||||  ||||||||||||||||||||| ||||  || ||||   ||||||||||    
T  9041223 tagccaattataaaataatacgtgaattgctaatccatgtcattaatcgtttccgttaaccctcttttacctccgttaatcatagatcaaactcacaaaa 9041322  T
Q  364 aacta 368  Q
    |||||    
T  9041323 aacta 9041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 20133102 - 20133038
Alignment:
Q  280 aataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  20133102 aataacacgtagattactaatccatgtcaccaatcgtcctcgttaaccctcttttacctccgtta 20133038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 43575262 - 43575210
Alignment:
Q  286 acgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 338  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||||||||||||    
T  43575262 acgtggattactaatccatgtcagtaatcgtccccattaaccctcttttacct 43575210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 14245889 - 14245959
Alignment:
Q  274 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||||||| | ||||| | ||  ||||||||||||||||| ||||||| |||||||| |||||||    
T  14245889 ttataaaataacacatagattacttatcgatgtcactaatcgtcccagttaaccttcttttacatctgtta 14245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 24162719 - 24162672
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||    
T  24162719 gggttggacttttctttccaagaatacccttaattttaaatacaaata 24162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 43577230 - 43577183
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  43577230 gggttggacttttctttcaaaaaataccctcaattttcaatacaaata 43577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 50231398 - 50231445
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  50231398 gggttgaaattttcttttcaaaaatacccttaattttaaatacaaata 50231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 49265943 - 49266009
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 333  Q
    |||| |||||||||||||| |||| |||| ||||   |||||||||| || ||||||||||||||||    
T  49265943 tagctaattataaaataacgcgtgaattactaatcagtgtcactaattgttcccgttaaccctcttt 49266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 9046420 - 9046387
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaat 300  Q
    ||||||||||||||||||||||||||||| ||||    
T  9046420 tagccaattataaaataacacgtggattactaat 9046387  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 14245797 - 14245841
Alignment:
Q  224 ttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||||||| |||| |||||||||||| |||||||||| |||||    
T  14245797 ttgaacttttatttctaaaaatacccttgattttaaatacaaata 14245841  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 14494661 - 14494697
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  14494661 gggttggacttttctttccaaaaatacccttaatttt 14494697  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 379
Target Start/End: Complemental strand, 44973148 - 44972992
Alignment:
Q  222 ggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccg 321  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||      ||||||||| ||| ||||||||  ||||||    
T  44973148 ggttggacttttctttctaaaaatacccttaattttaaatacaaatagtcaattataaaataac------attagtaatccatctcactaattttccccg 44973055  T
Q  322 ttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaa 379  Q
    |||||||| |||||||||  ||| ||||||||   | |||||||||||||  |||||||||||    
T  44973054 ttaacccttttttacctccattaaccaaagatcaaattcacaaaaaactagcacacaacaaaa 44972992  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 35193507 - 35193434
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35193507 caattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaccctcttttacctccgtta 35193434  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 309848 - 309925
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| | ||||||||||| ||||    
T  309848 tagccaattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaacttcttttacctccgtta 309925  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 424
Target Start/End: Original strand, 7061867 - 7062025
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 367  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||| | ||   ||||||||||||||    
T  7061867 caattataaaataacacatggattactaattcatatcactaatcgtcctcgttaa-cctcttttacctccgttatccacatatcaaactcacaaaaaact 7061965  T
Q  368 a--acacaacaaaatttcatgtta-cnnnnnnncaaccgcttttatgttgtacatctgtg 424  Q
    |  ||| |||||||  |||||||| |       |||||| ||||||||||||||||||||    
T  7061966 agcacaaaacaaaaactcatgttacctttttatcaaccgattttatgttgtacatctgtg 7062025  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 43528444 - 43528517
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||||||||||||||| ||| |||| |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  43528444 caattataaaataacatgtgaattactaatccatgtcactaatcgtctccgttaaccctcttttacctccgtta 43528517  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 44539602 - 44539531
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 338  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||| ||||||||||    
T  44539602 tagccaattataaaataacacgtggattactaattcatgtcattaattgtcacagttaaccttcttttacct 44539531  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 13594515 - 13594592
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||| ||||||||||||||| |||||||| |||| ||||| |||||||||| || |||||||||||||||||| ||||    
T  13594515 tagctaattataaaataacatgtggattactaatccatgtaactaatcgtctccattaaccctcttttacctccgtta 13594592  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 19901656 - 19901609
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  19901656 gggttggacttttctttccaaaaatacccttaattttaaataaaaata 19901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 25048013 - 25047962
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcc 318  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  25048013 tagccaattataaaataacacatggattactaatgtatgtcactaatcgtcc 25047962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 44539738 - 44539702
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||||||||||||||| ||||||||||||||||||    
T  44539738 gggttgaacttttctttccaaaaatacccttaatttt 44539702  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 7061734 - 7061781
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||||||||||||||  |||||||||||| |||||||||| |||||    
T  7061734 gggttgaacttttcttttcaaaaatacccttgattttaaatacaaata 7061781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 21956532 - 21956579
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| ||||||||||  ||||||||||||||||||||||| |||||    
T  21956532 gggttggacttttcttttcaaaaatacccttaattttaaatacaaata 21956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 8063290 - 8063236
Alignment:
Q  214 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    |||||| || ||||| ||||||||||||||||||||| |||||| |||| |||||    
T  8063290 catttttggattgaatttttctttcaaaaaataccctcaattttcaatacaaata 8063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 27339513 - 27339555
Alignment:
Q  286 acgtggattagtaattcatgtcactaatcgtccccgttaaccc 328  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  27339513 acgtggattactaattcatgtcactaatcgtctctgttaaccc 27339555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 43528298 - 43528340
Alignment:
Q  215 attttcgggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||    
T  43528298 atttttgggttggacttttctttccaaaaatacccttaatttt 43528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 2221938 - 2221974
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  2221938 gggttgaacttttctttccaaaaatacccttattttt 2221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 56467 - 56575
Alignment:
Q  269 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 365  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| | ||   ||||||||||||    
T  56467 gccaattataaaataacacgtggattattaatccatgtcactaaacgtctccgttaaccctcttttacctttgttaaccacatatcaaactcacaaaaaa 56566  T
Q  366 ctaacacaa 374  Q
    ||| |||||    
T  56567 ctagcacaa 56575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 56333 - 56374
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaata 262  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  56333 gggttggacttttctttccaaaaatacccttaattataaata 56374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 24432233 - 24432302
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 336  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24432233 tagccaattataaaataacatgtggaatactaattcatgtcactaatcgtccccgttaaccctcttttac 24432302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 5592765 - 5592692
Alignment:
Q  271 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  5592765 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 5592692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 32889059 - 32889105
Alignment:
Q  222 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 268  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32889059 ggttgaacttttctttccaaaaatacccttaattttaaatacaaata 32889105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 26528069 - 26528112
Alignment:
Q  214 cattttcgggttgaacttttctttcaaaaaatacccttaatttt 257  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26528069 catttttgggttgaacttttctttccaaaaatacccttaatttt 26528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 32889177 - 32889217
Alignment:
Q  221 gggttgaacttttctttcaaaaaatacccttaattttaaat 261  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  32889177 gggttgaacttttcttttcaaaaatacccttaattttaaat 32889217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 3567 - 3490
Alignment:
Q  267 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 344  Q
    |||| |||||||||||||||||||||||| |||| ||| |||||||||||||  ||||||||||||||||||| ||||    
T  3567 tagctaattataaaataacacgtggattactaatccatatcactaatcgtccatgttaaccctcttttacctccgtta 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 17305 - 17180
Alignment:
Q  270 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 366  Q
    ||||||||||||||| || ||||||| |||| |||||||||||| ||| |||||||||||||||||  || |||| ||| ||||   || ||||||||||    
T  17305 ccaattataaaataatacatggattactaatccatgtcactaattgtctccgttaaccctcttttagttccgttaaccatagatcaaacacacaaaaaac 17206  T
Q  367 ta--acacaacaaaatttcatgttac 390  Q
    ||  ||| ||||||| ||||||||||    
T  17205 tatcacaaaacaaaaattcatgttac 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 48321 - 48376
Alignment:
Q  214 cattttcgggttgaacttttctttcaaaa-aatacccttaattttaaatataaata 268  Q
    |||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  48321 catttttgggttggacttttcttttaaaaaaatacccttaattttaaatacaaata 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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