View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_17 (Length: 398)
Name: NF18021_high_17
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 40226340 - 40226725
Alignment:
| Q |
1 |
atatttccttttccatttcttgtgttttcttcctctgctatgtacttccgtttgccaccatctacaatataaatttttacaattaaagaaaacaacattg |
100 |
Q |
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| T |
40226340 |
atatttccttttccatttcttgtgttttcttcctctgctatgtacttccgtttgccaccatctacaatataaatttttacaattaaagaaaacaacattg |
40226439 |
T |
|
| Q |
101 |
atgtgctaacatttcataaagaaaacaacaataatctctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcnnnnnnnn |
200 |
Q |
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| T |
40226440 |
atgtgctaacatttcataaagaaaacaacaataatatctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcaaaaaaaa |
40226539 |
T |
|
| Q |
201 |
nt--gaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacat |
298 |
Q |
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| T |
40226540 |
ataaaaaaatgaatacaatatttgatgtgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacat |
40226639 |
T |
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| Q |
299 |
tgaagggtaaaaaatttaccagatttagaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcatctc |
384 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40226640 |
tgaagggtaaaaaacttaccagatttagaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcttctc |
40226725 |
T |
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