View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_2 (Length: 684)
Name: NF18021_high_2
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 313 - 673
Target Start/End: Complemental strand, 40893180 - 40892820
Alignment:
| Q |
313 |
actaaacaataggatcaagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgtaccattttcatttcattgt |
412 |
Q |
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| T |
40893180 |
actaaacaataggatcaagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgtaccattttcatttcattgt |
40893081 |
T |
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| Q |
413 |
aggatgagtcaacagaaaccatatactagcatggttatcaacataaatacaatcttagaagaaggttccggccaattcaagcgactatgatcatcaattt |
512 |
Q |
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| T |
40893080 |
aggatgagtcaacagaaaccatatactagcatggttatcaacataaatacaatcttagaagaaggttccggccaattcaagcgactatgatcatcaattt |
40892981 |
T |
|
| Q |
513 |
aaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattattgttgtttgtgtgtgaataacacatgttaggttgagagtggat |
612 |
Q |
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| T |
40892980 |
aaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattattgttgtttgtgtgtgaataacacatgttaggttgagagtggat |
40892881 |
T |
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| Q |
613 |
ggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgtgctg |
673 |
Q |
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| T |
40892880 |
ggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgtgctg |
40892820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 40893492 - 40893227
Alignment:
| Q |
1 |
tgttgcttctcacaaaacgtgcaataatcagaatgaaggttgttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgt |
100 |
Q |
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| T |
40893492 |
tgttgcttctcacaaaacgtgcaataatcagaatgaaggttgttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgt |
40893393 |
T |
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| Q |
101 |
cccaaaccctgccatcaattgtacttgttttgactatatggctctaatgaaagtcttgttttgtttatttaatgatgattgctttacaacatgtttacga |
200 |
Q |
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| T |
40893392 |
cccaaaccctgccatcaattgtacttgttttgactatatggctctaatgaaagtcttgttttgtttatttaatgattattgctttacaacatgtttacga |
40893293 |
T |
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| Q |
201 |
tatcatggtgcatatttctaagaaattaccggcaagcaaaggtgttattatgccagagtgcatatg |
266 |
Q |
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| T |
40893292 |
tatcatggtgcatatttctaagaaattaccggcaagcaaaggtgttattatgccagagtgcatatg |
40893227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 470 - 673
Target Start/End: Complemental strand, 44144510 - 44144307
Alignment:
| Q |
470 |
gaagaaggttccggccaattcaagcgactatgatcatcaatttaaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattat |
569 |
Q |
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| T |
44144510 |
gaagaaggttccggccaattcaagtaactatgatcatcaatttaatcacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattat |
44144411 |
T |
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| Q |
570 |
tgttgtttgtgtgtgaataacacatgttaggttgagagtggatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgt |
669 |
Q |
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| T |
44144410 |
tgttgtttgtgtgtgaataacacatgttaggttgagagtgtatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgt |
44144311 |
T |
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| Q |
670 |
gctg |
673 |
Q |
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|||| |
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| T |
44144310 |
gctg |
44144307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 44144622 - 44144533
Alignment:
| Q |
387 |
tgtttgtaccattttcatttcattgtaggatgagtcaacagaaaccatatact---agcatggttatcaacataaatacaatcttagaag |
473 |
Q |
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| T |
44144622 |
tgtttctaccattttcatttcattgtaggatgagtcaacagaaaccatatactagcagcatggttatcaacataaatacaatcttagaag |
44144533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 44144706 - 44144656
Alignment:
| Q |
343 |
tttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgt |
393 |
Q |
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| T |
44144706 |
tttttgaaggtgtacactaccaccaccttactcttgtatttaggtgtttgt |
44144656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 44145035 - 44145007
Alignment:
| Q |
54 |
aatactgcagcacatgaattctaggactt |
82 |
Q |
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| T |
44145035 |
aatactgcagcacatgaattctaggactt |
44145007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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