View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_high_22 (Length: 363)
Name: NF18021_high_22
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 52878079 - 52878409
Alignment:
| Q |
22 |
tcgagtacctatagtaatcctacctgatgggagggtggttcacagaacatatcaataccnnnnnnnnn--ccttttgaagtcatgttaatcgtatgttgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
52878079 |
tcgagtacctatagtaatcctacctgatgggagggtggttcacagaacatatcaatacctttttttttttccttttgaaatcatgttaatcgtatgttgg |
52878178 |
T |
|
| Q |
120 |
atgtgaacaatcatattcgtttgttgtcaagcaaacttaacctcaaagttaaaatgcaacaataaaatactcttaatattaaagatcaagacactaaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52878179 |
atgtgaacaatcatattcgtttgttgtcaagcaaacttaacctcaaagttaaaatgcaacaataaaatactcttaatattagagatcaagacactaaatt |
52878278 |
T |
|
| Q |
220 |
ttaagacacaaacatgtcttagagagaatagtctcgatcataactttagagtcgctttcaaagataatatgatcaacacctctgttacacaccacttgaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52878279 |
ttaagacacaaacatgtcttagagagaatagtctcgatcataactttagagtcgctttcaaagataacatgatcaacacctctgttacacaccacttgaa |
52878378 |
T |
|
| Q |
320 |
ttgcctcaaaactcaagtaacgtcgcaacct |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52878379 |
ttgcctcaaaactcaagtaacgtcgcaacct |
52878409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University