View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_28 (Length: 345)
Name: NF18021_high_28
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 55544460 - 55544146
Alignment:
| Q |
13 |
gagatgaatataaatattgaggtcttctatcttttaaaccgaggcaccatccacttactctnnnnnnntatttgtnnnnnnnttaattaatctttcctct |
112 |
Q |
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| T |
55544460 |
gagataaatataaatattgaggtcttctatcttttaaaccgaggcaccatccacttactctaaaaaaatatttgtaaaaaaattaattaatctttcctct |
55544361 |
T |
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| Q |
113 |
ctgcaatgc-ggttttcatccttcacaaatcgaccaacaataatctccatgttttctcccctacacaagaagaaccttcactatctaatatgcattcatt |
211 |
Q |
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| T |
55544360 |
ctgcaatgctggtttttatcctccgcaaatcgaccaacaataatctccctgttttctcccctacacaacaagaaccttcactatctaatatgcattcatt |
55544261 |
T |
|
| Q |
212 |
ttctctactagtttcgtatttggtgaatctgttgtctttgtatattacttttcccaaattaacaacctcatccaaaacctcttgcacaagtttcaaatgc |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55544260 |
ttctctactagtttcctatttggtgaatctgttgtctttgtatattacttttcccaaattaacaacctcatccaaaacctcttgcacaagtttcaaatgc |
55544161 |
T |
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| Q |
312 |
ctacgcccaacatca |
326 |
Q |
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||||||||||||||| |
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| T |
55544160 |
ctacgcccaacatca |
55544146 |
T |
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