View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_high_3 (Length: 656)
Name: NF18021_high_3
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 101 - 641
Target Start/End: Complemental strand, 32510932 - 32510392
Alignment:
| Q |
101 |
ggggtgaaagcatgcttatttacatgaccttaatttccacacaacttcgattagatacatctcataggatcattaaaattcagctacttaattgttatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
32510932 |
ggggtgaaagcatgcttatttacatgaccttaatttctacacaacttcgatcagatacatctcatagaatcattaaaattcagctacttaattgttctac |
32510833 |
T |
|
| Q |
201 |
cgcgccaaacatactcaccatgatgttggcgacaccgaaatgaccctggatgctgagatggcgagcacacacatcgcttcacagaaccactctcaccgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32510832 |
cgcgccaaacatactcaccatgatgttggcgacaccgaaatgaccctggatgctgagacggcgagcacacgcatcgcttcacagaaccactctcaccgga |
32510733 |
T |
|
| Q |
301 |
gctgccactatcaccaccatcaccatgatgaacatgtcttggctcatgttcttccccatttgacctttgaagtacaagccatcttgtatgtacaatcaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32510732 |
gctgccactatcaccaccatcaccatgatgaacatgtattggctcatgttcttccccatttgacctttgaagtacaagccatcttgtatgtacaatcaaa |
32510633 |
T |
|
| Q |
401 |
ccttcttggttcacaaaaggaatttttgggtgacacattgatttttctttgtcctttcaaattcttcaagccctttactgtatatttataatgttcctgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32510632 |
gcttcttggttcacaaaaggaatttttgggtgacacattgatttttctttgtcctttcaatttcttcaagccctttactttatatttataatgttcctta |
32510533 |
T |
|
| Q |
501 |
ctttagtgagtaatgagtgcaaaaagaaaagaatcttcggtaatatgaatttgtagaggaataaaaggggaaaaggtgatggataagtaaaggttgtgtg |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32510532 |
ctttagtgagtaatgagttcaaaaagaaaagaatcttcggtaatatgaatttgtagaggaataaaaggggaaaaggtgatggataagtaaaggtattgtg |
32510433 |
T |
|
| Q |
601 |
tttgccataaaaggcttttgaatagattcccttggaaagat |
641 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32510432 |
tttgccataaaaggcttttgaatatattcccttggaaagat |
32510392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University