View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_33 (Length: 310)
Name: NF18021_high_33
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 13880531 - 13880807
Alignment:
| Q |
17 |
tgattatctaaaaacatg-aaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaatttaaaaatacactaaaaaggtgt |
115 |
Q |
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| T |
13880531 |
tgattatctaaaaacatggaaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaatttaaaaatacactaaaaaggtgt |
13880630 |
T |
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| Q |
116 |
ataccaatcaactccatttcatactgatcagcatggttaatttgtatatagaaaactacgtggaataaaaagcatagaattcgatcttacaaaagatata |
215 |
Q |
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| T |
13880631 |
ataccaatcaactccatttcatactga---ggatggttaatttgtatatagaaaactacgtggaataaaaagcatagaattcgatcttacaaaagatgta |
13880727 |
T |
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| Q |
216 |
gtaatatggtaaatgtcgcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattgattttt |
295 |
Q |
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| T |
13880728 |
gtaatatggtaaatgtcgcataggaaacaaaagatgtagttactgcagctaccaatttcataaacattgaattgattttt |
13880807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 13253894 - 13254045
Alignment:
| Q |
93 |
ttaaaaatacactaaaaaggtgtataccaatcaactccatttcatactgatcagcatggttaatttgtatatagaaaactacgtggaataaaaagcatag |
192 |
Q |
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| T |
13253894 |
ttaaaaatacactaaaaaggtgtaaaccaatctactctatttcaaactga---ggataattaatt-gtatataaaaaactaagtggagtaaaaagcatag |
13253989 |
T |
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| Q |
193 |
aattcgatcttacaaaagatatagtaatatggtaaatgtcgcataggaaacaaaag |
248 |
Q |
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| T |
13253990 |
aatttgatcttacaaaagatgtagtaatatggtaaatgtcgcataggaaacaaaag |
13254045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 13252959 - 13253038
Alignment:
| Q |
17 |
tgattatctaaaaa-catg-aaacataaagtgttaaaagagagaaactcatggcacactaactctaaagatcttcaattt |
94 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |
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| T |
13252959 |
tgattatctaaaaaacatggaaacataaagtgttaaaagaaaggaactcctggcacactaactctaaagatcttcaattt |
13253038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 13254239 - 13254277
Alignment:
| Q |
257 |
actgcagctaccaatttcataaacattgaattgattttt |
295 |
Q |
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| T |
13254239 |
actgcagctaccaatttcataaacattgaattgattttt |
13254277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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