View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_38 (Length: 247)
Name: NF18021_high_38
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_38 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 43092446 - 43092217
Alignment:
| Q |
18 |
aaaggaaggacttgtaaacaatttcaattgtattgactattctcttgtttttgtaactgcagtagaagaacccaattttctcttgtaatcctacttttgg |
117 |
Q |
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| T |
43092446 |
aaaggaaggacttgtaaacaatttcaattgtattgactgttctcttgtttttgtaaatgcagtagaagaacccaattttctcttgtaatcctacttttgg |
43092347 |
T |
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| Q |
118 |
gtgttggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgtatc |
217 |
Q |
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| T |
43092346 |
gtgttggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacatgtgttgctcaaattgtatc |
43092247 |
T |
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| Q |
218 |
cttaaagaaaatttcactcctgttaactgc |
247 |
Q |
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| T |
43092246 |
cttaaagaaaatttcactcctgttaactgc |
43092217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 43084811 - 43084703
Alignment:
| Q |
115 |
tgggtgttggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgt |
214 |
Q |
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| T |
43084811 |
tgggtgttggaattgcaacagtcacagatttgcagttgaatgctctgggatctttcttatctcttctggcggtgattacaacatgtgttgctcagattgt |
43084712 |
T |
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| Q |
215 |
atccttaaa |
223 |
Q |
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| T |
43084711 |
atccttaaa |
43084703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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