View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_39 (Length: 244)
Name: NF18021_high_39
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 44088522 - 44088307
Alignment:
| Q |
14 |
atatcaataagaaaacaagcactttattaaaaagcaatgtatcgcgttaaacaaaaccgaaaaacataatatatagaaatatcaaatgaagaaatttatt |
113 |
Q |
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| T |
44088522 |
atatcaataagaaaacaagcactttattaaaaagcaatgtatcgcgttaaacaaaaccgaaaaacataatatatagaaatatcaaatgaagaaatttatt |
44088423 |
T |
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| Q |
114 |
aatatctagtagcgactgtgtgaatttgagaagttgcgatagctagcattgagaaaattttcatttaagcagaataaagtataaactatgcacagttaaa |
213 |
Q |
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| T |
44088422 |
aatatctagtagcgactgtgtgaatttgagaagttgcgatagctagcattgagaaaattttcatttaagcagaataaagtataaactatgcacagttaaa |
44088323 |
T |
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| Q |
214 |
tcaagagaaacataaa |
229 |
Q |
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|||||||||||||||| |
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| T |
44088322 |
tcaagagaaacataaa |
44088307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 44050382 - 44050303
Alignment:
| Q |
88 |
agaaatatcaaatgaagaaatttatta---atatctagtagcgactgtgtgaatttgagaagttgcgatagctagcattg |
164 |
Q |
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| T |
44050382 |
agaaatatcaaatgaagaaatttattactaatatctagtattgactgtgtgaatttgagaagttgcaatagctagcattg |
44050303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 44088607 - 44088547
Alignment:
| Q |
166 |
gaaaattttcatttaagcagaa-taaagtataaactatgcacagttaaatcaagagaaaca |
225 |
Q |
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| T |
44088607 |
gaaaattttcatttaaacagaaataaagtataaactatgcatagttaaattaagagaaaca |
44088547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 44089788 - 44089748
Alignment:
| Q |
81 |
aatatatagaaatatcaaatgaagaaatttattaatatcta |
121 |
Q |
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| T |
44089788 |
aatatacagaaatatcaaatgaagaaattcattaatatcta |
44089748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 44068355 - 44068320
Alignment:
| Q |
190 |
aagtataaactatgcacagttaaatcaagagaaaca |
225 |
Q |
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| T |
44068355 |
aagtataaactatgcacagttaaataaagagaaaca |
44068320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 44053494 - 44053458
Alignment:
| Q |
186 |
aataaagtataaactatgcacagttaaatcaagagaa |
222 |
Q |
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| T |
44053494 |
aataaagtataaactatggacagttaaattaagagaa |
44053458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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