View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_4 (Length: 596)
Name: NF18021_high_4
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 34826250 - 34825685
Alignment:
| Q |
18 |
aaaaagggcatatatcaccattgtatattgtctattttgtgtgtccaaatagcattcatgtaacattttactgataatacttagctgactaacttattat |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826250 |
aaaaagggcatatatcaccattgtatattgtctactttgtgtgtccaaatagcattcatgtaacattttactgataatacttagctgactaacttattat |
34826151 |
T |
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| Q |
118 |
aaacatcaaacctaaaaggatcgcaaaagaaatttaacctattgttcgaattctcttggaccatctaagtctatgttcaatttagtacttacacattaac |
217 |
Q |
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|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826150 |
aaacatcaaatctaaaagaaccgcaaaagaaatttaacctattgttcgaattctcttggaccatctaagtctatgttcaatttagtacttacacattaac |
34826051 |
T |
|
| Q |
218 |
ccgacttaattctacagttctactttctatctataaatgaagtaacattaacatgcaccattcgaaactcccacacacgtccatgaatttttgaatttga |
317 |
Q |
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|| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34826050 |
ccaacttaattctacggttctactttgtatctataaatgaagtaacat------gcaccattcgaaactcccacacacgtccatgaatttttgaatttaa |
34825957 |
T |
|
| Q |
318 |
actcgaatgaaaatgttcaattaaaaaatatcgatattatcaactaaattagactttacaacgaaccatcaacaaatttatttaattttttcaaaaataa |
417 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
34825956 |
actcaaatgaaaatgttcagttaaaaaatatcgatattatcaactaaattagactttacaacaaaccatcaacaaatttatttaattttttcaaaagtaa |
34825857 |
T |
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| Q |
418 |
aataaaatactccctcaaattatagtagcgtgttcgaacaagcaacaacaaaaggtcaagtcaaggaaattaacaaaaacgcatgtttgcacatgcaact |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825856 |
aataaaatactccctcaaattatagtagcgtgttcgaacaagcaacaccaaaaggtcaagtcaaggaaattaacaaaaacgcatgtttgcacatgcaact |
34825757 |
T |
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| Q |
518 |
caatattcagt----atcctacaaattcggaaattgttaaggtttgacgctaccttatctattcatattcat |
585 |
Q |
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||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34825756 |
caatattcattcaatatactacaaattcggaaattgttaaggtttgacgctaccttttctattcatattcat |
34825685 |
T |
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