View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_high_40 (Length: 242)

Name: NF18021_high_40
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_high_40
NF18021_high_40
[»] chr8 (2 HSPs)
chr8 (1-236)||(11063302-11063537)
chr8 (122-168)||(28431383-28431429)
[»] chr5 (4 HSPs)
chr5 (62-166)||(17890717-17890821)
chr5 (81-165)||(42910450-42910534)
chr5 (107-154)||(40516775-40516822)
chr5 (108-148)||(19192067-19192107)
[»] chr1 (3 HSPs)
chr1 (63-150)||(5276945-5277032)
chr1 (108-168)||(34634146-34634206)
chr1 (64-120)||(44167589-44167645)
[»] chr4 (2 HSPs)
chr4 (55-197)||(32028192-32028334)
chr4 (62-199)||(33290860-33290997)
[»] chr2 (2 HSPs)
chr2 (62-201)||(12702846-12702986)
chr2 (104-157)||(5296842-5296895)
[»] chr7 (5 HSPs)
chr7 (80-146)||(23822869-23822935)
chr7 (130-168)||(36522526-36522564)
chr7 (150-186)||(26526614-26526650)
chr7 (108-195)||(36729542-36729629)
chr7 (61-97)||(44426043-44426079)
[»] chr6 (6 HSPs)
chr6 (87-195)||(32695412-32695520)
chr6 (63-146)||(30808440-30808523)
chr6 (62-157)||(33944756-33944851)
chr6 (80-195)||(32234436-32234553)
chr6 (62-96)||(34197875-34197909)
chr6 (62-114)||(32234500-32234552)
[»] chr3 (5 HSPs)
chr3 (82-144)||(810771-810833)
chr3 (81-148)||(23944565-23944632)
chr3 (76-157)||(14222651-14222732)
chr3 (60-97)||(31215818-31215855)
chr3 (105-157)||(27664089-27664141)
[»] scaffold0020 (1 HSPs)
scaffold0020 (116-168)||(172515-172567)
[»] scaffold0045 (1 HSPs)
scaffold0045 (63-130)||(58600-58667)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11063537 - 11063302
Alignment:
Q  1 cattgaatctatgtatcatgctttattttactctctttagcaaattcaaaattctaagtacatgtttgatatcaaggtggatatgtcagaatcacggtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||||||||||||||    
T  11063537 cattgaatctatgtatcatgctttattttactctctttagcaaattcaaaatcctaagtacatgtttcatatcacggtggataggtcagaatcacggtaa 11063438  T
Q  101 tccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattcttatatactcaccatgataccaaacatatgcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11063437 tccatcatgattttatagaaactataaagtgtaacttttaaaaaattatggtggatcgtcgtgattcttatatactcaccatgataccaaacatatgcta 11063338  T
Q  201 acttataatcataactaaatctatttcctaatggtt 236  Q
    |||||||||||||| |||||||||||||||||||||    
T  11063337 acttataatcataagtaaatctatttcctaatggtt 11063302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 28431429 - 28431383
Alignment:
Q  122 ctataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattct 168  Q
    |||||||||||| ||||| ||||||||||||||||||| || |||||    
T  28431429 ctataaagtgtagcttttgaaaaatcatggtggatcgttgttattct 28431383  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 17890717 - 17890821
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcg 161  Q
    ||||||| |||||  |||| ||||||||||||||||| |||||   |||||||| | |||||||||||||||||||||||||||||| | |||||||||     
T  17890717 atgtttggtatcaccgtgggtatgtcagaatcacggtgatccactgtgattttacataaactataaagtgtaacttttaaaaaatcacgatggatcgtca 17890816  T
Q  162 tgatt 166  Q
    |||||    
T  17890817 tgatt 17890821  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 42910450 - 42910534
Alignment:
Q  81 atatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgat 165  Q
    ||||| || ||||||||| ||||||  ||||||| ||||| ||| |||||| | ||||| |||||||| ||||||||||||||||    
T  42910450 atatgccaaaatcacggtgatccattgtgattttgtagaagctacaaagtgcagcttttgaaaaatcacggtggatcgtcgtgat 42910534  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 40516822 - 40516775
Alignment:
Q  107 atgattttatagaaactataaagtgtaacttttaaaaaatcatggtgg 154  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||||||    
T  40516822 atgattttatagaagctacaaagtgtagcttttgaaaaatcatggtgg 40516775  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 19192107 - 19192067
Alignment:
Q  108 tgattttatagaaactataaagtgtaacttttaaaaaatca 148  Q
    |||||||| | |||||||||||| |||||||||||||||||    
T  19192107 tgattttacaaaaactataaagtataacttttaaaaaatca 19192067  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 5276945 - 5277032
Alignment:
Q  63 tgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatg 150  Q
    |||||| |||||  |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||  |||| ||||||||||    
T  5276945 tgtttggtatcacagtggatatgtcagaatcacggtgatccatcatgattttgtagaaactacaaagtgtattttttgaaaaatcatg 5277032  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 34634206 - 34634146
Alignment:
Q  108 tgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattct 168  Q
    ||||||| |||||||||||| | |||  ||||||||||| | |||||||||| ||||||||    
T  34634206 tgattttgtagaaactataaggcgtagattttaaaaaattacggtggatcgttgtgattct 34634146  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 44167645 - 44167589
Alignment:
Q  64 gtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaa 120  Q
    |||||||||||| | |  ||||||||||||||||| ||||||||| ||||| |||||    
T  44167645 gtttgatatcaaagagagtatgtcagaatcacggtgatccatcataattttgtagaa 44167589  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 32028334 - 32028192
Alignment:
Q  55 taagtacatgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtgg 154  Q
    ||||| |||||||| ||||| |||||| ||||| ||||||| || || || | |||||||  | || |||||||||||| ||||| ||||||||| ||||    
T  32028334 taagtgcatgtttggtatcacggtggagatgtctgaatcacagtgattcaccgtgattttgcataagctataaagtgtagcttttgaaaaatcatagtgg 32028235  T
Q  155 atcgtcgtgattcttatatactcaccatgataccaaacatatg 197  Q
    ||| |||||||||| | |||   ||| ||||||||||||||||    
T  32028234 atcatcgtgattctgacatatctaccgtgataccaaacatatg 32028192  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 33290860 - 33290997
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcg 161  Q
    ||||||||||||| ||||||| ||  ||||||||| ||| ||| | |||||||  | || ||| | |||| ||||||| |||| |||  |||||||||||    
T  33290860 atgtttgatatcacggtggatgtgctagaatcacgataacccaccgtgattttgcataagctagagagtgaaacttttgaaaattcacagtggatcgtcg 33290959  T
Q  162 tgattcttatatactcaccatgataccaaacatatgct 199  Q
    ||||| | | | || |||| ||||| ||||||||||||    
T  33290960 tgattttgacacacccaccgtgatatcaaacatatgct 33290997  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 12702986 - 12702846
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgta-acttttaaaaaatcatggtggatcgtc 160  Q
    ||||||| ||| | ||||||||| | ||||||||||| |  ||||||||||||  |||||||| ||||||||  |||||| |||||||| |||| || ||    
T  12702986 atgtttggtattatggtggatatctaagaatcacggtgactcatcatgattttgcagaaactacaaagtgtagccttttacaaaatcattgtgggtcatc 12702887  T
Q  161 gtgattcttatatactcaccatgataccaaacatatgctaa 201  Q
    |||||| | |||||  |||| |||  |||||||||||||||    
T  12702886 gtgattatgatatatccaccgtgaagccaaacatatgctaa 12702846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 5296895 - 5296842
Alignment:
Q  104 atcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatc 157  Q
    |||| ||||||  ||||||||||||||||| ||||||||||||| |||||||||    
T  5296895 atcacgattttgcagaaactataaagtgtagcttttaaaaaatcgtggtggatc 5296842  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 23822935 - 23822869
Alignment:
Q  80 gatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaat 146  Q
    ||||||||||||| ||| |||||||   ||||||||||||||||| ||||| |||||||||||||||    
T  23822935 gatatgtcagaattacgataatccactgtgattttatagaaactacaaagtttaacttttaaaaaat 23822869  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 36522526 - 36522564
Alignment:
Q  130 tgtaacttttaaaaaatcatggtggatcgtcgtgattct 168  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36522526 tgtaacttttaaaaaatcatgatggatcgtcgtgattct 36522564  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 26526650 - 26526614
Alignment:
Q  150 ggtggatcgtcgtgattcttatatactcaccatgata 186  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26526650 ggtggatcgtcgtgattctgatatactcaccatgata 26526614  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 36729629 - 36729542
Alignment:
Q  108 tgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattcttatatactcaccatgataccaaacata 195  Q
    |||||||| | || ||| |||||||| |||||  |||||||||||| || ||||||||||||| | |  ||||| |||||||||||||    
T  36729629 tgattttacaaaacctacaaagtgtagcttttgcaaaatcatggtgcatagtcgtgattcttacacaaccaccaagataccaaacata 36729542  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 44426079 - 44426043
Alignment:
Q  61 catgtttgatatcaaggtggatatgtcagaatcacgg 97  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  44426079 catgtttgatatcatggtggatttgtcagaatcacgg 44426043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 32695520 - 32695412
Alignment:
Q  87 cagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattcttatatactcaccatgata 186  Q
    |||||| | ||||||||  ||||||||| |||||  ||||||||||| |||||||||||||| | |||||  | |||||||| | ||| | ||| |||||    
T  32695520 cagaattatggtaatccgccatgattttgtagaagttataaagtgtagcttttaaaaaatcacgatggattattgtgattctgacatattaaccgtgata 32695421  T
Q  187 ccaaacata 195  Q
    |||||||||    
T  32695420 ccaaacata 32695412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 30808440 - 30808523
Alignment:
Q  63 tgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaat 146  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||||| |||||||  | || ||| ||| |||||||||| ||||||    
T  30808440 tgtttggtatcatggtggatatatcagaatcacggtgatccatcgtgattttgaaaaagctacaaaatgtaacttttgaaaaat 30808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 33944756 - 33944851
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatc 157  Q
    ||||||||||||| ||||||| ||| ||||||||||| ||||||| |||||||  |||| ||  ||||| || |||||||| ||||| | ||||||    
T  33944756 atgtttgatatcacggtggatgtgttagaatcacggtgatccatcgtgattttgcagaagctgcaaagtttagcttttaaagaatcacgatggatc 33944851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 32234436 - 32234553
Alignment:
Q  80 gatatgtcagaatcacggtaatc--catcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattcttatatactc 177  Q
    ||||||||||||||||||| ||   || | |||||| |||||| ||| |||||||| ||| || ||||| ||||||||||   |||||||| | |||  |    
T  32234436 gatatgtcagaatcacggtgatgatcaccgtgatttcatagaagctacaaagtgtagcttatagaaaattatggtggatcactgtgattctgacatatcc 32234535  T
Q  178 accatgataccaaacata 195  Q
    ||||||||||||||||||    
T  32234536 accatgataccaaacata 32234553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 34197909 - 34197875
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacg 96  Q
    ||||||||||||| |||||||||||||||||||||    
T  34197909 atgtttgatatcacggtggatatgtcagaatcacg 34197875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 32234552 - 32234500
Alignment:
Q  62 atgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgatttt 114  Q
    ||||||| ||||| |||||||||||||||||||| || ||||| ||| |||||    
T  32234552 atgtttggtatcatggtggatatgtcagaatcacagtgatccaccataatttt 32234500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 810771 - 810833
Alignment:
Q  82 tatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaa 144  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||| |||||||| |||| |||||    
T  810771 tatgtcagaatcatggtgatccaccatgattttatagaagctacaaagtgtagctttcaaaaa 810833  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 23944632 - 23944565
Alignment:
Q  81 atatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatca 148  Q
    |||||||||||||||| |||| |||| |||||||  | ||| |||||||||||| |||| ||||||||    
T  23944632 atatgtcagaatcacgataattcatcgtgattttgcaaaaattataaagtgtaattttttaaaaatca 23944565  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 14222732 - 14222651
Alignment:
Q  76 ggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatc 157  Q
    ||||| ||| ||||||||| ||| ||||| ||||||||||  ||| ||||||||||||  |||| |||||||| ||| ||||    
T  14222732 ggtggctatatcagaatcatggtgatccaccatgattttactgaagctataaagtgtagtttttcaaaaatcacggtcgatc 14222651  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 31215855 - 31215818
Alignment:
Q  60 acatgtttgatatcaaggtggatatgtcagaatcacgg 97  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  31215855 acatgtttggtatcaaggtggatgtgtcagaatcacgg 31215818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 27664141 - 27664089
Alignment:
Q  105 tcatgattttatagaaactataaagtgtaacttttaaaaaatcatggtggatc 157  Q
    |||||||||| || ||  |||||||||||||||||| ||||||| ||||||||    
T  27664141 tcatgattttgtaaaaggtataaagtgtaacttttacaaaatcaaggtggatc 27664089  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 172567 - 172515
Alignment:
Q  116 tagaaactataaagtgtaacttttaaaaaatcatggtggatcgtcgtgattct 168  Q
    ||||| ||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  172567 tagaagctacaaagtgtagcttttgaaaaatcatggtggattgtcgtgattct 172515  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 58667 - 58600
Alignment:
Q  63 tgtttgatatcaaggtggatatgtcagaatcacggtaatccatcatgattttatagaaactataaagt 130  Q
    |||||||||| | ||||| ||||||||||| ||||| ||||||| |||||||| | ||||| ||||||    
T  58667 tgtttgatattatggtgggtatgtcagaattacggtgatccatcgtgattttacacaaactttaaagt 58600  T

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