View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_high_43 (Length: 227)

Name: NF18021_high_43
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_high_43
NF18021_high_43
[»] chr2 (4 HSPs)
chr2 (1-209)||(37664934-37665142)
chr2 (1-210)||(18095923-18096133)
chr2 (1-210)||(13452059-13452269)
chr2 (17-158)||(37505645-37505786)
[»] scaffold0244 (1 HSPs)
scaffold0244 (1-205)||(8180-8386)
[»] chr8 (3 HSPs)
chr8 (1-210)||(35822754-35822964)
chr8 (1-205)||(33509632-33509837)
chr8 (4-120)||(23965687-23965802)
[»] chr4 (3 HSPs)
chr4 (1-210)||(37401646-37401856)
chr4 (10-205)||(44922921-44923117)
chr4 (90-210)||(841491-841612)
[»] chr3 (1 HSPs)
chr3 (1-210)||(40698553-40698763)
[»] chr1 (2 HSPs)
chr1 (1-210)||(1259419-1259629)
chr1 (107-212)||(8292267-8292373)
[»] chr5 (4 HSPs)
chr5 (32-210)||(13798653-13798832)
chr5 (75-150)||(42150517-42150592)
chr5 (90-202)||(37481412-37481525)
chr5 (1-49)||(13798837-13798885)
[»] chr6 (1 HSPs)
chr6 (10-210)||(29602854-29603055)
[»] chr7 (1 HSPs)
chr7 (101-167)||(15667716-15667785)
[»] scaffold0086 (1 HSPs)
scaffold0086 (88-205)||(14555-14671)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 37664934 - 37665142
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  37664934 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatataactataaccaagattccacgccaattgaatacccttccaactagt 37665033  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattcccctattatttcttagaagaccttcaaaacctgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37665034 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattcccctattatttcttagaagaccttcaaaacctgcat 37665133  T
Q  201 taccaggat 209  Q
    |||| ||||    
T  37665134 tacctggat 37665142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18096133 - 18095923
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||| ||||||||||||||||   | |||||||||||| ||||| ||| | ||||||| ||||| ||||||||| |||| |||||||||| |||     
T  18096133 tagtatcaagaataagatccaaagctacttgagagtcagattccatgatgatagacctataaccaagatcccacgccaactgaagacccttccaaatagc 18096034  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt-cccctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||| |||||||||||    
T  18096033 tgaaagttcagcaaacgaattagtagctcttccacaagatccggaaaaaccatgaatccaattccccctattgtttctcaaaagacctccaaaacctgca 18095934  T
Q  200 ttaccaggatt 210  Q
    |||||||||||    
T  18095933 ttaccaggatt 18095923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13452269 - 13452059
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||| ||||||||||||||  |  | ||||||||| || ||||| ||||| ||||||| ||||| ||||||||| |||| |||||||||| ||      
T  13452269 tagtatcaaaaataagatccaaaggagcatgagagtcagactccatgatgatatacctataaccaagatcccacgccaactgaagacccttccaagtaaa 13452170  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattc-ccctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||| ||| | || ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||  ||||||||||    
T  13452169 tgaaagatcaaccaaaaaattagtatctctaccacaagatccagaaaaaccatgaatccaattcgccctattatttttcagaagacctcaaaaacctgca 13452070  T
Q  200 ttaccaggatt 210  Q
    |||||||||||    
T  13452069 ttaccaggatt 13452059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 37505645 - 37505786
Alignment:
Q  17 atccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagttgaaagttcagcaaac 116  Q
    |||||||||||||| ||| |||||||| | ||| ||  | ||||||| ||||| ||| |||  ||||| |||  ||||| ||| |||||||||||| ||     
T  37505645 atccaaagctgtctgagaatcagattccaagatgattgacctataaccaagatcccaagccctttgaagacctctccaaatagctgaaagttcagccaat 37505744  T
Q  117 aaattagtagctctgccacaagatccagaaaaaccatgaatc 158  Q
    ||||||| ||||||  |||||| | |  ||||||||||||||    
T  37505745 aaattagaagctctaacacaagtttcgaaaaaaccatgaatc 37505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8180 - 8386
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| ||||| ||||| ||||||| ||||| ||||||||| |||| ||| |||||| |||     
T  8180 tagtatcaacaataagacccaaagctacctaagagtcagattccatgatgatatacctataaccaagatcccacgccaactgaagacctttccaaatagc 8279  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt--cccctattatttcttagaagaccttcaaaacctgc 198  Q
    |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||| ||||| | ||||||| ||||||||||    
T  8280 tgaaagttcagcaaacaaattagtagctcttccacaagatctaaaaaaaccatgaatccaattcccccctattgtttctcataagacctccaaaacctgc 8379  T
Q  199 attacca 205  Q
    |||||||    
T  8380 attacca 8386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 35822754 - 35822964
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||| ||| | ||||||| |  |||||||||||| |||| |||||||||| |||     
T  35822754 tagtatcaacaataagatccaaagctacctgagagtcagattccatgatgatagacctataaccagtattccacgccaactgaagacccttccaaatagc 35822853  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattccc-ctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||| ||||| ||||| | ||||||| |||||||||||    
T  35822854 tgaaagttcagcaaacaaattagtagctcttccgcaagatccgaaaaaaccatgaatccaattccctctattgtttctcaaaagacctccaaaacctgca 35822953  T
Q  200 ttaccaggatt 210  Q
    |||||||||||    
T  35822954 ttaccaggatt 35822964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 33509837 - 33509632
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||| ||| | ||||||| |||||  || ||||| |||| |||||||||| | |     
T  33509837 tagtatcaacaataagatccaaagctacctgagagtcagattccatgatgatagacctataaccaagatctcatgccaactgaagacccttccaaatggc 33509738  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt-cccctattatttcttagaagaccttcaaaacctgca 199  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||| |||||||||||    
T  33509737 tgaaagttcagtaaacaaattggtagctcttccacaagatccggaaaaaccatgaatccaattccccctattgtttctcaaaagacctccaaaacctgca 33509638  T
Q  200 ttacca 205  Q
    ||||||    
T  33509637 ttacca 33509632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 23965687 - 23965802
Alignment:
Q  4 tatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagttga 103  Q
    ||||||||||||||||||||||| |   |||||||||||  |||||| || | || |||| |||||  |||||||| |||| ||| |||||| ||| |||    
T  23965687 tatcaacaataagatccaaagctattcgagagtcagatttcatgata-tagacctgtaaccaagatctcacgccaactgaagaccgttccaaatagctga 23965785  T
Q  104 aagttcagcaaacaaat 120  Q
    ||||||||| |||||||    
T  23965786 aagttcagccaacaaat 23965802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 37401856 - 37401646
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||| ||||||||||||||||   | |||||||||||| ||||| ||| | ||||||| ||||| ||||||||| |||| |||||||||| |||     
T  37401856 tagtatcaagaataagatccaaagctacttgagagtcagattccatgatgatagatctataaccaagatcccacgccaactgaagacccttccaaatagc 37401757  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt-cccctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||| |||||||||||    
T  37401756 tgaaagttcagcaaacaaattagtagctcttccacaagatccggaaaaaccatgaatccaattccccctattgtttctcaaaagacctccaaaacctgca 37401657  T
Q  200 ttaccaggatt 210  Q
    ||| |||||||    
T  37401656 ttatcaggatt 37401646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 44923117 - 44922921
Alignment:
Q  10 caataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagttgaaagttc 109  Q
    ||||||||||| ||| |||||||||||||||||| ||||| ||| |  |||||  ||||| ||||| ||| |||| |||||||||| ||| |||||||||    
T  44923117 caataagatccgaagttgtctaagagtcagattccatgatgatagacttataatcaagatcccacgtcaactgaaaacccttccaaatagctgaaagttc 44923018  T
Q  110 agcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt-cccctattatttcttagaagaccttcaaaacctgcattacca 205  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| | || |||| |||||||||||||||||    
T  44923017 agcaaacaaattagcagctctgtcacaagatccagaaaaaccatgaatccaattccccctattgtttctcaaaacacctccaaaacctgcattacca 44922921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 841612 - 841491
Alignment:
Q  90 ttccaactagttgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatcc-aattcccctattatttcttagaagacctt 188  Q
    |||||| ||| |||||||||||| |  |||||||  ||||| |||||||| |||||||| || ||||||| ||||| | |||  ||||| |  ||||||     
T  841612 ttccaaatagctgaaagttcagctagtaaattagacgctctaccacaagaaccagaaaatccttgaatccaaattctcatatcgtttctcaagagacctc 841513  T
Q  189 caaaacctgcattaccaggatt 210  Q
    |||||||||||| ||| |||||    
T  841512 caaaacctgcatcaccgggatt 841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 40698553 - 40698763
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||| ||| | ||||||| ||||| ||||||||| |||| |||||||||| |||     
T  40698553 tagtatcaacaataagatccaaagctacctgagagtcagattccatgatgatagacctataaccaagatcccacgccaactgaagacccttccaaatagc 40698652  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattccc-ctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||  |||| ||||| | ||||||| |||||||||||    
T  40698653 tgaaagttcagcaaacaaattattagctcttccacaagatctagaaaaaccatgaatccaattccctttattgtttctcaaaagacctccaaaacctgca 40698752  T
Q  200 ttaccaggatt 210  Q
    ||| |||||||    
T  40698753 ttatcaggatt 40698763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1259419 - 1259629
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagt 100  Q
    ||||||||| ||||||||||||||||   | |||||||||||| ||||| ||| | ||||||| ||||| ||||||||| |||| |||||||||| |||     
T  1259419 tagtatcaagaataagatccaaagctacttgagagtcagattccatgatgatagacctataaccaagatcccacgccaactgaagacccttccaaatagc 1259518  T
Q  101 tgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaatt-cccctattatttcttagaagaccttcaaaacctgca 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||| ||||| | ||||||| |||||||||||    
T  1259519 tgaaagttcagcaaacaaattagtagctcttccacaagatccggaaaaaccatgagtccaattccccctattgtttctcaaaagacctccaaaacctgca 1259618  T
Q  200 ttaccaggatt 210  Q
    |||||||||||    
T  1259619 ttaccaggatt 1259629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 8292267 - 8292373
Alignment:
Q  107 ttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaa-ttcccctattatttcttagaagaccttcaaaacctgcattacca 205  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||| | ||| ||||| |||| ||||| ||||||| ||||||||||||||||| |    
T  8292267 ttcagctaacaaataagtagctctaccacaagatccagaaaaaccatgattacaatttcccatattgtttctcagaagacgttcaaaacctgcattacta 8292366  T
Q  206 ggattga 212  Q
    |||||||    
T  8292367 ggattga 8292373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 13798832 - 13798653
Alignment:
Q  32 agagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagttgaaagttcagcaaacaaattagtagctctg 131  Q
    ||||| |||||| ||||| ||| | ||||||| || || ||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||     
T  13798832 agagtgagattccatgatgatagacctataaccaatatcccacgccaactgaagacccttccaaatagctgaaagttcagcaaacaaattagtagctctt 13798733  T
Q  132 ccacaagatccagaaaaaccatgaatcc-aattcccctattatttcttagaagaccttcaaaacctgcattaccaggatt 210  Q
    ||||||||||| ||||||| |||||||| ||| |||||||| ||||| | ||||||| ||||| ||||||||||| ||||    
T  13798732 ccacaagatccggaaaaacaatgaatccaaatccccctattgtttctcaaaagacctccaaaatctgcattaccaagatt 13798653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 42150517 - 42150592
Alignment:
Q  75 gccaattgaatacccttccaactagttgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaac 150  Q
    |||||||||| |||  ||||| ||| ||||||||||||  | ||||| | |||||| |||||||||||||||||||    
T  42150517 gccaattgaagacctctccaaatagctgaaagttcagcccataaatttgaagctcttccacaagatccagaaaaac 42150592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 37481525 - 37481412
Alignment:
Q  90 ttccaactagttgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatcc-aattcccctattatttcttagaagacctt 188  Q
    |||||| |||||||||||||| | |  ||||||| |||| | | |||||| |||||||| || ||||||| ||||||| |||  ||||| | ||||| |     
T  37481525 ttccaaatagttgaaagttcaactagtaaattagaagctatactacaagaaccagaaaatccttgaatccaaattcccatatcgtttctcataagacttc 37481426  T
Q  189 caaaacctgcatta 202  Q
    ||||||||||||||    
T  37481425 caaaacctgcatta 37481412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13798885 - 13798837
Alignment:
Q  1 tagtatcaacaataagatccaaagctgtctaagagtcagattcgatgat 49  Q
    ||||||||||||||||||||||||||  || ||||| |||||| |||||    
T  13798885 tagtatcaacaataagatccaaagctacctgagagtgagattccatgat 13798837  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 29602854 - 29603055
Alignment:
Q  10 caataagatccaaagctgtctaagagtcagattcgatgataatatagctataactaagattccacgccaattgaatacccttccaactagttgaaagttc 109  Q
    ||||||||||||||| |||||||||||||||||| || || ||| |   ||| | ||| | ||| || | |||||  || |||||| ||| ||||| ||     
T  29602854 caataagatccaaagttgtctaagagtcagattccataatgataaattgatacccaaggtcccatgcgagttgaagtcctttccaaatagctgaaaattt 29602953  T
Q  110 agcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatcc-aattcccctattatttcttagaagaccttcaaaacctgcattaccagga 208  Q
    ||| |  |||||||  ||||| |||||||| |||||||| || ||||||| ||||||| |||  ||||| | ||||||| |||||| ||||||||| |||    
T  29602954 agctagtaaattagacgctctaccacaagaaccagaaaatccttgaatccaaattcccatatcgtttctcaaaagacctccaaaacatgcattaccggga 29603053  T
Q  209 tt 210  Q
    ||    
T  29603054 tt 29603055  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 15667716 - 15667785
Alignment:
Q  101 tgaaagttcagcaaacaaattagtag---ctctgccacaagatccagaaaaaccatgaatccaattcccc 167  Q
    |||||||||||| |||||||||||||   || |||||||||||  ||||||||||||||| |||||||||    
T  15667716 tgaaagttcagccaacaaattagtagtaactatgccacaagatgtagaaaaaccatgaattcaattcccc 15667785  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 14671 - 14555
Alignment:
Q  88 ccttccaactagttgaaagttcagcaaacaaattagtagctctgccacaagatccagaaaaaccatgaatccaattcccctattatttcttagaagacct 187  Q
    |||| ||| |||||||||||||| | |  ||||| | || ||| | ||||||||||||||| || |||||  ||||||| |||||||||||||||||||     
T  14671 cctttcaaatagttgaaagttcacctagtaaatttgaagttctacaacaagatccagaaaa-ccttgaatataattcccatattatttcttagaagaccg 14573  T
Q  188 tcaaaacctgcattacca 205  Q
     |||||  ||||||||||    
T  14572 ccaaaatgtgcattacca 14555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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