View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_high_45 (Length: 226)

Name: NF18021_high_45
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_high_45
NF18021_high_45
[»] chr2 (11 HSPs)
chr2 (18-210)||(29549023-29549215)
chr2 (31-210)||(29511021-29511200)
chr2 (31-210)||(29518139-29518318)
chr2 (31-210)||(29507201-29507380)
chr2 (31-210)||(29535275-29535454)
chr2 (31-210)||(29541435-29541614)
chr2 (30-200)||(29490449-29490619)
chr2 (30-183)||(29488369-29488522)
chr2 (64-200)||(29505414-29505550)
chr2 (27-200)||(30256547-30256720)
chr2 (44-210)||(29502540-29502706)
[»] chr4 (1 HSPs)
chr4 (32-180)||(51266291-51266439)
[»] scaffold0186 (1 HSPs)
scaffold0186 (113-210)||(9161-9258)
[»] chr8 (1 HSPs)
chr8 (113-210)||(18874658-18874755)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 29549023 - 29549215
Alignment:
Q  18 atcaaatgcaaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29549023 atcaaatgcaaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattcca 29549122  T
Q  118 aacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29549123 aacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 29549215  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 29511021 - 29511200
Alignment:
Q  31 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 130  Q
    |||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29511021 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29511120  T
Q  131 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  29511121 tattgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcat 29511200  T

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Target: chr2; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 29518139 - 29518318
Alignment:
Q  31 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 130  Q
    |||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29518139 taccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacctcatcaata 29518238  T
Q  131 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    || |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  29518239 tactgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcat 29518318  T

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Target: chr2; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 29507201 - 29507380
Alignment:
Q  31 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 130  Q
    ||||||||||||||||||||||||||| |||  |||||||| | ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  29507201 taccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttatcattccaaacctcatcaata 29507300  T
Q  131 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  29507301 tattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcat 29507380  T

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Target: chr2; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 29535275 - 29535454
Alignment:
Q  31 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 130  Q
    |||||||||||||| |||||||||||| ||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  29535275 taccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacctcatcaata 29535374  T
Q  131 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    || |||||||| ||||||||||||||||| | ||| ||||||||||| ||||||||||||||||| ||||  ||||||||    
T  29535375 tactgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcat 29535454  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 29541435 - 29541614
Alignment:
Q  31 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 130  Q
    |||||||||||||| ||| ||||||||||||  |||||||| |||||| || |||||||||||||||||||||||| | || |||||||| |||||||||    
T  29541435 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 29541534  T
Q  131 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    || | ||||   |  |  || |||||||| ||||| ||||| || || ||||| ||||||||||| ||||||||||||||    
T  29541535 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgtgaaccgggttcat 29541614  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 29490619 - 29490449
Alignment:
Q  30 ttaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaat 129  Q
    ||||||| ||||||||||||||| ||||||||  |||||| | ||||| |||||||||||||||||  || |||| ||| ||||||||||| ||||| ||    
T  29490619 ttacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctat 29490520  T
Q  130 atattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaa 200  Q
    ||| || |||  |||    ||||||||||  ||||||||||||||||||||||| || |||||||| ||||    
T  29490519 atactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttcttatgaa 29490449  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 29488522 - 29488369
Alignment:
Q  30 ttaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaat 129  Q
    ||||||| || ||| |||||||| ||||||||  |||||| | ||||| |||||||||||||||||  || | || ||| ||||||||||||||||| ||    
T  29488522 ttacctttttgtcactataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatgaagctttatcattccaaacttcatctat 29488423  T
Q  130 atattgaacagcaattaaagattcacaaatgggttttccattatgaataagaac 183  Q
     ||||| |||  ||||  |||||||||||||| |||||||||||| ||||||||    
T  29488422 gtattgcacaataattgcagattcacaaatggattttccattatggataagaac 29488369  T

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Target: chr2; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 29505414 - 29505550
Alignment:
Q  64 agcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggt 163  Q
    |||||| ||||| || ||||||||||||||||| |||||||| |  ||||||||||| ||||||||||||| ||||  | |||  || |||||||||| |    
T  29505414 agcttgggatctttggtaaggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaatatttagtgactcacaaatggat 29505513  T
Q  164 tttccattatgaataagaacagggattttcttctgaa 200  Q
    || |||||||| || ||||| || |||||||| ||||    
T  29505514 ttgccattatggattagaactggaattttcttgtgaa 29505550  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 30256547 - 30256720
Alignment:
Q  27 aaattaccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatc 126  Q
    |||||||||| || ||| |||| ||| ||||||||  |||||| | | ||| |||||| | ||||| ||  || | || ||| |||||||||||||||||    
T  30256547 aaattacctttttgtcactatactcaacccaaaatctagcttgagctttctcataagggtgagaagacatgaatgaagctttatcattccaaacttcatc 30256646  T
Q  127 aatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaa 200  Q
     || ||||| |||  ||||  |||||||||||||| |||||||||||| |||||||| || || ||||| ||||    
T  30256647 tatgtattgcacaataattgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaa 30256720  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 29502706 - 29502540
Alignment:
Q  44 atataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatatattgaacagcaa 143  Q
    |||||||||  |||||||  |||||| | ||||| ||| |||||||| ||||  || | || ||| ||||||||||||||||| || || || |||   |    
T  29502706 atataatcaaaccaaaatctagcttgagctctctcatacggatcagagggcatgaatgaagctttatcattccaaacttcatctatgtactgcacaatga 29502607  T
Q  144 ttaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    ||  |||||||||||||| |||||||||||| |||||||| || || ||||| ||||  ||||||||    
T  29502606 ttgcagattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcat 29502540  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 51266291 - 51266439
Alignment:
Q  32 accttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaatat 131  Q
    ||||| ||||||| | ||||||||||||||  |||||| | ||||||||  ||||| |  |||| ||| |||| ||  || ||||| || |||||||| |    
T  51266291 accttattatcaacaaaatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgt 51266390  T
Q  132 attgaacagcaattaaagattcacaaatgggttttccattatgaataag 180  Q
    ||| ||||  ||| || |||||||||||||| || ||||||||||||||    
T  51266391 attcaacaataatcaaggattcacaaatgggcttcccattatgaataag 51266439  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 9161 - 9258
Alignment:
Q  113 ttccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    |||||||| ||||||||||||| ||||  ||| |  || ||| |||| |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||    
T  9161 ttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcat 9258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 18874658 - 18874755
Alignment:
Q  113 ttccaaacttcatcaatatattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcat 210  Q
    |||||||| ||||||||||||| ||||  ||| |  || ||| |||| |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||    
T  18874658 ttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggttcat 18874755  T

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