View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_49 (Length: 206)
Name: NF18021_high_49
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 41823401 - 41823321
Alignment:
| Q |
108 |
cactgtgattgggtgaaggccaaacatcttcacgaaattttaggtactagtcgtagcagtctaagactatagtggaaatta |
188 |
Q |
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| T |
41823401 |
cactgtgattgggtgaaggccaaacatcttcacgaaattttaggtactagtcgtagcagtctaagactatagtggaaatta |
41823321 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41823513 - 41823445
Alignment:
| Q |
1 |
atataccgtcaccacatacattttgaactag---caattcatggcacagaacaagtaaatgaagatacg |
66 |
Q |
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| T |
41823513 |
atataccgtcaccacatacattttgaactagtagcaattcatggcacagaagaagtaaatgaagatacg |
41823445 |
T |
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