View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_high_6 (Length: 552)

Name: NF18021_high_6
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_high_6
NF18021_high_6
[»] chr1 (2 HSPs)
chr1 (12-360)||(41815763-41816110)
chr1 (396-535)||(41816141-41816280)
[»] chr2 (4 HSPs)
chr2 (188-248)||(10455113-10455173)
chr2 (188-255)||(519036-519103)
chr2 (188-255)||(21153219-21153286)
chr2 (188-245)||(24460133-24460190)
[»] chr8 (1 HSPs)
chr8 (188-255)||(39069569-39069636)
[»] chr3 (3 HSPs)
chr3 (188-255)||(54409976-54410043)
chr3 (188-255)||(55135919-55135986)
chr3 (188-255)||(32000548-32000615)
[»] chr5 (1 HSPs)
chr5 (188-255)||(6720155-6720222)
[»] chr4 (1 HSPs)
chr4 (188-255)||(47650129-47650201)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 41815763 - 41816110
Alignment:
Q  12 caaaggcaaaaatgtgtggaatttacaaaacggcaaaccttcataatccttattttcagactcaaaattgtcatctggctgaacagacaagacaccaggc 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41815763 caaaggcaaaaatgtgtggaatttacaaaacg-caaaccttcataatccttattttcagactcaaaattgtcatctggctgaacagacaagaccccaggc 41815861  T
Q  112 acacctgcaccacaatcacaagttcacaacaagcatttcaaatttcattaaacatgtttaattcaaactttgaaacaaaggttaagaatctataaagcta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41815862 acacctgcaccacaatcacaagttcacaacaagcatttcaaatttcattaaacatgtttaattcaaactttgaaacaaaggttaagaatctataaagcta 41815961  T
Q  212 accagatagctcatgtgcacaatcctcatcaagttcacaacaaaacccaaaattggttttccatgaaacatgatatatacacatttgtgcatccttctcg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41815962 accagatagctcatgtgcacaatcctcatcaagttcacaacaaaacccaaaattggttttccatgaaacatgatatatacacatttgtgcatccttctcg 41816061  T
Q  312 ctgcaaacaccattgttatcatcaaattttagagaaaacaagaaacaca 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816062 ctgcaaacaccattgttatcatcaaattttagagaaaacaagaaacaca 41816110  T

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Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 396 - 535
Target Start/End: Original strand, 41816141 - 41816280
Alignment:
Q  396 aattgaatgtccttacttactttcccatgattttggtcaaaatttgagcataatggtcaacaatttgagctttggtaacaacaccaacaacaggtttatc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41816141 aattgaatgtccttacttactttcccatgattttggtcaaaatttgagcataatggtcaacaatttgagctttggtaacaacaccaacagcaggtttatc 41816240  T
Q  496 cattctaacaacccaatgctttgaatttccattagggaac 535  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41816241 cattctaacaacccaatgctttgaatttccattagggaac 41816280  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 10455113 - 10455173
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttca 248  Q
    |||||||||||||||| |||||||| ||| |||||||| |||||||||||| |||||||||    
T  10455113 aaaggttaagaatctaaaaagctaaacagctagctcatatgcacaatcctcgtcaagttca 10455173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 519103 - 519036
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||||||| |||||||| ||| |||||||| ||||||||||||  |||||||||| ||||    
T  519103 aaaggttaagaatctaaaaagctaaacagctagctcatatgcacaatcctcgccaagttcacatcaaa 519036  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 21153286 - 21153219
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||||||| |||||||| ||| |||||||| |||||||| ||| ||||||||||| ||||    
T  21153286 aaaggttaagaatctaaaaagctaaacagctagctcatatgcacaatgctcgtcaagttcacatcaaa 21153219  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 24460133 - 24460190
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagt 245  Q
    |||||||||||||||| |||||||| ||| ||| |||| || ||||||||| ||||||    
T  24460133 aaaggttaagaatctaaaaagctaaacagctagttcatatgtacaatcctcgtcaagt 24460190  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 39069636 - 39069569
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||||||| |||||||| ||| |||||||| |||||||||||| ||||| ||||| ||||    
T  39069636 aaaggttaagaatctaaaaagctaaacagctagctcatatgcacaatcctcgtcaagctcacatcaaa 39069569  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 54410043 - 54409976
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||||||| |||||||| ||  |||||||| |||||||||||| ||||||||||| ||||    
T  54410043 aaaggttaagaatctaaaaagctaaacaactagctcatatgcacaatcctcgtcaagttcacatcaaa 54409976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 55135919 - 55135986
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||| ||| |||||||| ||| |||||||| |||||||||||| ||||||||||| ||||    
T  55135919 aaaggttaagaaactaaaaagctaaacagctagctcatatgcacaatcctcgtcaagttcacatcaaa 55135986  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 32000548 - 32000615
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    ||||||||| |||||| |||||||| ||  |||||||| |||||||||||| ||||||||||| ||||    
T  32000548 aaaggttaaaaatctaaaaagctaaacaactagctcatatgcacaatcctcgtcaagttcacatcaaa 32000615  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 6720222 - 6720155
Alignment:
Q  188 aaaggttaagaatctataaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    |||||||||||||||| |||| ||| ||| |||||||| |||| ||||||| ||||||||||| ||||    
T  6720222 aaaggttaagaatctaaaaagttaaacagctagctcatatgcaaaatcctcgtcaagttcacatcaaa 6720155  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 47650129 - 47650201
Alignment:
Q  188 aaaggttaagaatcta-----taaagctaaccagatagctcatgtgcacaatcctcatcaagttcacaacaaa 255  Q
    ||||||||||||||||     ||||||||| ||| |||||||| |||||||||||| ||||||||||| ||||    
T  47650129 aaaggttaagaatctaaaaattaaagctaaacagctagctcatatgcacaatcctcgtcaagttcacatcaaa 47650201  T

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