View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_high_7 (Length: 545)
Name: NF18021_high_7
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 176 - 530
Target Start/End: Complemental strand, 47965278 - 47964944
Alignment:
| Q |
176 |
tagagagggtaaggtgttttgtttagactcttgcaatttgttatcagccgacaagtgatgtcgaattctgcttatgttgttctcaaaactcagcttgatg |
275 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47965278 |
tagagagggtgaggtgttttgtttagactcttgcaatttgttatcagccgacaagtgatgtcgaattctggttatgttgttctcaaaactcagcttgatg |
47965179 |
T |
|
| Q |
276 |
atgatccctagacaccggtgttccaacaattatatgagagaaaaccttcttccataccatcaattctaaaggtggtgatgtgtgtgacaaacagtaatat |
375 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47965178 |
atgatcccgagacaccggtgttccaacaattacatgaga--------------------tcaattctaaaggtggtgatgtgtgtgacaaacattaatat |
47965099 |
T |
|
| Q |
376 |
atttttattgaatttcaatttaaaacaacgcatatacatttagaacaaatagaaacataaatagtaaaaactttaacacgaaaaatctaataattttaaa |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47965098 |
atttttattgaatttcaatttaaaacaacgcatatacatttagaacaaatagaaacataaatagtaaaaactttaacacgaaaaatctaataattttaaa |
47964999 |
T |
|
| Q |
476 |
catttccctgtttctcctgcaaaagttattattcactttgcaactttggatacat |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47964998 |
catttccctgtttctcctgcaaaagttattattcacttttcaactttggatacat |
47964944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 47965318 - 47965277
Alignment:
| Q |
19 |
attcctacgccaaaaattgaacatcgacgatatttttgcata |
60 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
47965318 |
attcctacgccaaaaattgaacattgacgatatgtttgcata |
47965277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University