View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_8 (Length: 542)
Name: NF18021_high_8
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_8 |
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| [»] scaffold0429 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 42592262 - 42591752
Alignment:
| Q |
18 |
ggtatatcagggttactcataaccttgattacaacaatattcacaggaaattctcccctaacagcaatccaattgatttgggtgaatgcgctaatgtgtc |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42592262 |
ggtatatcagggctactcataaccttgattacaacaatattcacaggaaattctcctctaacagaaatccaattgatttgggtgaatgcgctaatgtgtc |
42592163 |
T |
|
| Q |
118 |
ttctcggtggcctaatgatgttgatggaattaagtagcgaggaagagcttgccagacaaccatctgataggagtcaaccaattataaccaagaaaatatg |
217 |
Q |
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|||| ||||||||||||||| |||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
42592162 |
ttctgggtggcctaatgatggtgatggaattaagtagtgaggaagagcttgtcaaacaaccatatgataggaatcaactgattataaccaagaaaatatg |
42592063 |
T |
|
| Q |
218 |
gaaacgcatagtttttcaagttttttatcaggcttcttcatgcatgatacttgaatttgtggggcatgtaaatgacagtgaaaagcaagtacggaaaatc |
317 |
Q |
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| T |
42592062 |
gaaaaacattgtttttcaggttttgtatcaggcttctgcctgcataatacttgaatttgggggacatgtaactgacagggaaaaacaagtaaggaaaacc |
42591963 |
T |
|
| Q |
318 |
atgatcttcaatacattctttttaagccagctttttaatctgctcaataccatggatttgttgaaaacagaagttttcaaggttgattttcagaagtatt |
417 |
Q |
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|||||||||||||||||||| ||| ||||||| || ||||||||||||||||||| ||| |||||| |||||||||| ||| ||||| |||||||| | | |
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| T |
42591962 |
atgatcttcaatacattcttcttatgccagctgttcaatctgctcaataccatgggttttttgaaagcagaagtttttaagattgatgttcagaagcact |
42591863 |
T |
|
| Q |
418 |
gtttcgcagtggctttaggcggttgttttgttatgcaggtcgtggttattgagtatgcaaaaggcctagcagatttcacgcgtctgaatgccactggatg |
517 |
Q |
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||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| || ||| |||||||||||| |||| |
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| T |
42591862 |
gtttctcagtggctttaggtagttgttttgttatgcaggtagtggttattgagtatgcaaaaggcctggcatattgcatgcggctgaatgccactagatg |
42591763 |
T |
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| Q |
518 |
ggctatctgtg |
528 |
Q |
| |
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||| ||||||| |
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| T |
42591762 |
ggccatctgtg |
42591752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 21 - 492
Target Start/End: Original strand, 4092517 - 4092988
Alignment:
| Q |
21 |
atatcagggttactcataaccttgattacaacaatattcacaggaaattctcccctaacagcaatccaattgatttgggtgaatgcgctaatgtgtcttc |
120 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | |||| ||||||||| |||| |
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| T |
4092517 |
atatcagggttactcataaccttgattacaacaattttcacaggaaattctcctctaacagcaatccaaatgatttggataaatgtgctaatgtgccttc |
4092616 |
T |
|
| Q |
121 |
tcggtggcctaatgatgttgatggaattaagtagcgaggaagagcttgccagacaaccatctgataggagtcaaccaattataaccaagaaaatatggaa |
220 |
Q |
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| ||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||| |||||||| ||| ||||||||||||| |||||| | ||| |
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| T |
4092617 |
taggtggcctaatgatggtgatggaattaagtcgcgaagaagagcttgccaaacaaccatgtgataggaatcagccaattataaccatgaaaatcttgaa |
4092716 |
T |
|
| Q |
221 |
acgcatagtttttcaagttttttatcagg-cttcttcatgcatgatacttgaatttgtggggcatgtaaatgacagtgaaaagcaagtacggaaaatcat |
319 |
Q |
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| ||| |||| ||| ||||| ||||||| |||||| ||||||||||||| |||||| ||||||| | | | |||||||||||||||| |||||| ||| |
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| T |
4092717 |
aaacattgtttatcaggttttgtatcaggccttctt-atgcatgatacttcaatttggggggcatattactcacagtgaaaagcaagttaggaaaaccat |
4092815 |
T |
|
| Q |
320 |
gatcttcaatacattctttttaagccagctttttaatctgctcaataccatggatttgttgaaaacagaagttttcaaggttgatt-ttcagaagtattg |
418 |
Q |
| |
|
||||||||| |||||||| || ||||||| |||||||||||||||| | | |||||||||||| | ||| ||| || | ||||| ||||||| | |
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| T |
4092816 |
gatcttcaacacattcttattttgccagctctttaatctgctcaataacgtatatttgttgaaaaaacaaggtttgaa-gatgattgttcagaacttgat |
4092914 |
T |
|
| Q |
419 |
tttcgcagtggctttaggcggttgttttgttatgcaggtcgtggttattgagtatgcaaaaggcctagcagatt |
492 |
Q |
| |
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|||| | |||||||||||| ||||| |||| |||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
4092915 |
tttctcggtggctttaggcagttgtgttgtaatgcaggttttggtgattcagtatgcaaaaggcctagcagatt |
4092988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 15713164 - 15713089
Alignment:
| Q |
79 |
cagcaatccaattgatttgggtgaatgcgctaatgtgtcttctcggtggcctaatgatgttgatggaattaagtag |
154 |
Q |
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|||||||||||||||||| |||||| |||||||||| |||| ||||||||||| ||| | ||||||| |||||| |
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| T |
15713164 |
cagcaatccaattgatttaggtgaacatgctaatgtgttttctgggtggcctaataatggtaatggaatgaagtag |
15713089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 8325 - 8446
Alignment:
| Q |
87 |
caattgatttgggtgaatgcgctaatgtgtcttctcggtggcctaatgatgttgatggaattaagtagcgaggaagagcttgccagacaaccatctgata |
186 |
Q |
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||||||||||||||||| |||||||||| || | ||||||||||| | | ||||||||||||| | ||||||||||||||| | |||| | ||||| |
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| T |
8325 |
caattgatttgggtgaacttgctaatgtgttttttgggtggcctaattgttgtaatggaattaagtaccaaggaagagcttgccaaaaaaccttatgata |
8424 |
T |
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| Q |
187 |
ggagtcaaccaattataaccaa |
208 |
Q |
| |
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| T |
8425 |
tgaatcaacatattttaaccaa |
8446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 45144 - 45063
Alignment:
| Q |
87 |
caattgatttgggtgaatgcgctaatgtgtcttctcggtggcctaatgatgttgatggaattaagtagcgaggaagagcttg |
168 |
Q |
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||||||||||||||||| ||| |||| | |||| ||||| ||||||||| | ||||| ||||| ||| |||||||||||| |
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| T |
45144 |
caattgatttgggtgaacctgctgatgtattttctgggtggtctaatgatggtaatggagttaagaagcaaggaagagcttg |
45063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 29544 - 29516
Alignment:
| Q |
75 |
ctaacagcaatccaattgatttgggtgaa |
103 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29544 |
ctaacagcaatccaattgatttgggtgaa |
29516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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