View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_high_9 (Length: 526)
Name: NF18021_high_9
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 507
Target Start/End: Original strand, 42223886 - 42224382
Alignment:
| Q |
11 |
agattattcttactgagatacaaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaa |
110 |
Q |
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| T |
42223886 |
agattattcttactgagatacaaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaa |
42223985 |
T |
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| Q |
111 |
gatgtgatgaattggatatggaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttg |
210 |
Q |
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| T |
42223986 |
gatgtgatgaattggatatggaactagggattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttg |
42224085 |
T |
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| Q |
211 |
tggcaactcgcctgatagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctct |
310 |
Q |
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| T |
42224086 |
tggcaactcgcctgatagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctct |
42224185 |
T |
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| Q |
311 |
gagagttgaagtcttgaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataaga |
410 |
Q |
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| T |
42224186 |
gagagttgaagtcttgaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataaga |
42224285 |
T |
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| Q |
411 |
gattgccaaaggttgaaggaattttaccagtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgt |
507 |
Q |
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| T |
42224286 |
gattgccaaaggttgaaggaatttgacctgtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgt |
42224382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 31 - 507
Target Start/End: Original strand, 42211690 - 42212166
Alignment:
| Q |
31 |
caaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaagatgtgatgaattggatatg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211690 |
caaatgagtgaggtttttcaagttgttgaaaagaggcattggcccatgaaacctattgttagaaagatcaataatttgaagatgtgatgaattggatatg |
42211789 |
T |
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| Q |
131 |
gaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttgtggcaactcgcctgatagat |
230 |
Q |
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| T |
42211790 |
gaactaggaattaccccttcaaatctattggttgccaaagcaagtgtccctatattcggaaaagcttcgccgaaattttgtggcaactcgcctgatagat |
42211889 |
T |
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| Q |
231 |
tgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaag |
330 |
Q |
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| T |
42211890 |
tgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtcttgaaag |
42211989 |
T |
|
| Q |
331 |
attgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaagga |
430 |
Q |
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| T |
42211990 |
attgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttgaagga |
42212089 |
T |
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| Q |
431 |
attttaccagtgagattattgacagaaaagtctaaactctgtagattatggagttgacccaattgtggtggaagtgt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42212090 |
attttaccagtgagattattgacagaaaagtctaaactttgtagattatggagttgacccaattgtggtggaagtgt |
42212166 |
T |
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