View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_1 (Length: 730)
Name: NF18021_low_1
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 17 - 722
Target Start/End: Complemental strand, 42312346 - 42311630
Alignment:
| Q |
17 |
attaatgaatgtgatattggagatctacaggtgagataacat--ggaaatgaagttcata--gcagttttcttaagtaggtgtttattcatatgttttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
42312346 |
attaatgaatgtgatattggagatctacaggtgagataacatatggaaatgaacttcatatagcagttttcttaagtaggtgtttattcatatgttttgt |
42312247 |
T |
|
| Q |
113 |
ctatttttggttcagatctgacatcgtttttagttaaactagctgcatggttattatataatatatattcatgttttttgaaaattaaaaagatgtcaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42312246 |
ctatttttggttcagatctgacatcgtttttagttaaactagctgcatggttattatacattatatattcatgttttttagaaattaaaaagatgtcaag |
42312147 |
T |
|
| Q |
213 |
atgtgcattcaggaataaatgtccgggcttatgtttgactgtagatacagctagtatcctattcctcattgttatttagctttgatggaaaattgtttta |
312 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
42312146 |
atgtgaattcaggaataaatgtccgggcttatgtttgactgtagatacagctagtatccaactcctcattgttattcagctttgatggaaaattgtttta |
42312047 |
T |
|
| Q |
313 |
gttattttgaaattattggagttggtgcatttttaggaattctataaggcctcaaaatccaagtatgatagtgatcctgattttaaaaccaaggcacgtc |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42312046 |
gttattttgaaattatttaagttggtgcatttttaggaattctataagacctcaaaatccaagtatgatagtgatcccgattttaaaaccaaggcacgtc |
42311947 |
T |
|
| Q |
413 |
agtcagtggtcaagctccaggtaaatttttacttcatgttttttctctt-----------ctatttgctagatcacagggaattggttatacatttttgt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42311946 |
agtcagtggtcaagctccaggtaaatttttacttcatgttttttctcttctttttgtcacctatttgctagatcacagggaattggttatacatttttgt |
42311847 |
T |
|
| Q |
502 |
atgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatcaac |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42311846 |
atgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatcgac |
42311747 |
T |
|
| Q |
602 |
gccttggagttcatttggaggaaaaggtaagggttctagctagtttcttttgaatctcccatgtggaattccttatcccttttctgttcttttaatttag |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42311746 |
gccttggagttcatttggaggaaaaggtaatggtt----ctagtttcttttgaatctcccatgaggaattccttatcccttttctgttcttttaatttag |
42311651 |
T |
|
| Q |
702 |
tgttgggcctcttagaattat |
722 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42311650 |
tgttgggcctcttagaattat |
42311630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 278 - 441
Target Start/End: Complemental strand, 47976541 - 47976378
Alignment:
| Q |
278 |
tcattgttatttagctttgatggaaaattgttttagttattttgaaattattggagttggtgcatttttaggaattctataaggcctcaaaatccaagta |
377 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
47976541 |
tcatcgttatttagcttcgatggaaaattattttacttattctgaaattattggagttggtgcatttttaggcattctataaggcctcaaaattgaagtt |
47976442 |
T |
|
| Q |
378 |
tgatagtgatcctgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttt |
441 |
Q |
| |
|
|||||||||||||||||| || | ||||||| | |||||| ||| ||||||||||||||||| |
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|
| T |
47976441 |
tgatagtgatcctgatttcaagaaaaaggcacagctgtcagtagtcgagctccaggtaaatttt |
47976378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 462 - 640
Target Start/End: Complemental strand, 47976333 - 47976151
Alignment:
| Q |
462 |
ctatttgctagatcacagggaattggttatacattttt-gtatgcctgaattttgatttcagagagggga---tcccaagtatcgcgaagcatggcataa |
557 |
Q |
| |
|
|||||||| || ||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||| | | |
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|
| T |
47976333 |
ctatttgcaaggtcatggggaattggttttacattttttgtatgcctgaattttgatttcagagtggggaggatcccaagtatcgcacggcatggaaaca |
47976234 |
T |
|
| Q |
558 |
aatttgtgaagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
640 |
Q |
| |
|
|||||| || |||||||| |||||| ||||||||||||||| ||||||||| | | ||||||||||| |||||||||||||| |
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|
| T |
47976233 |
aatttgcgatattagtaggactgaatttaacaaggtctatcagcgccttggaatccgtttggaggaaatggtaagggttctag |
47976151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 47977060 - 47976977
Alignment:
| Q |
18 |
ttaatgaatgtgatattggagatctacaggtgagataac--atggaaatgaagttcatagcagttttcttaagtaggtgtttat |
99 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||| || |||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
47977060 |
ttaaggaatctgatattggagatctacaggtgagacaacatatcgaaatgaacttcataccagttttcttatgtaggtgtttat |
47976977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 480 - 640
Target Start/End: Original strand, 51566497 - 51566658
Alignment:
| Q |
480 |
ggaattggttatacattttt-gtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggc |
578 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||| | |
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|
| T |
51566497 |
ggaattggttttacattttttgtctgcctgaattttgatttcagggaggggatcccaagtatcgcacggcatggaaacaaatttgtgatgttagtaggac |
51566596 |
T |
|
| Q |
579 |
tgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
640 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| |
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|
| T |
51566597 |
tgaatttaacaaggtctatcaacgccttggaattcgtttggaggaaatggtaaggattctag |
51566658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 278 - 455
Target Start/End: Original strand, 51566267 - 51566443
Alignment:
| Q |
278 |
tcattgttatttagctttgatggaaaattgttttagttattttgaaattattggagttgg-tgcatttttaggaattctataaggcctcaaaatccaagt |
376 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| | || |
|
|
| T |
51566267 |
tcattgtt-tttagctttgatggtaaattattttacttattctgaaattattggagttgggtgcatttttaggcattctataaggcctcaaaattgaggt |
51566365 |
T |
|
| Q |
377 |
atgatagtgatcctgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttttacttcatgttttt |
455 |
Q |
| |
|
|||||||||||||| |||||| || |||| |||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
51566366 |
ttgatagtgatcctgcttttaagttaaatgcacagcagtcagtggtcaagctccaggtaaa-ttttacttcaagttttt |
51566443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 51565775 - 51565929
Alignment:
| Q |
18 |
ttaatgaatgtgatattggagatctacaggtgagataac--atggaaatgaagttcatagcagttttcttaagtaggtgtttattcatatgttttgtc-- |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
51565775 |
ttaatgaatctgatattggagatctacaggtgagataacatatggaaatgaacttcataccagttttcatatgtaggtgtttattcatatgtttggtcgg |
51565874 |
T |
|
| Q |
114 |
tatttttggttcagatctgacatcgtttttagttaaactagctgcatggttattat |
169 |
Q |
| |
|
|| ||||||||||| |||||| | || ||||| | ||| |||||||||||| |||| |
|
|
| T |
51565875 |
tagttttggttcaggtctgacgttgtgtttagct-aaccagctgcatggttgttat |
51565929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 500 - 640
Target Start/End: Original strand, 34030367 - 34030507
Alignment:
| Q |
500 |
gtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatca |
599 |
Q |
| |
|
|||||| | |||||| || |||||| |||||| ||| ||||||| | |||||||| |||||||||| ||||||||||||| | | ||||||||||||| |
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|
| T |
34030367 |
gtatgcattaatttttatctcagagtggggataccaggtatcgcaaggcatggcaacaaatttgtgatattagtagggctgagtttgacaaggtctatca |
34030466 |
T |
|
| Q |
600 |
acgccttggagttcatttggaggaaaaggtaagggttctag |
640 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
34030467 |
acgtcttggagttcaactggaggaaatggtaagggttctag |
34030507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 640
Target Start/End: Original strand, 5076254 - 5076347
Alignment:
| Q |
547 |
gcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
640 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| | ||||| |||||||| | |||||||||| |||||||||| |||||||| ||||| |
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|
| T |
5076254 |
gcatggcaacaaatttgtgatgttagtagggctgagttcgacaagatctatcaatgtattggagttcaattggaggaaatggtaaggggtctag |
5076347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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