View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_11 (Length: 475)
Name: NF18021_low_11
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Original strand, 28760974 - 28761433
Alignment:
| Q |
16 |
gatagtcctctcaacttaaaggtaatgcatcttcaaagccattacagtggcattaactgcactcctacatttagaataacaatggttgttaagattctaa |
115 |
Q |
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| T |
28760974 |
gatagtcctctcaacttaaaggtaatgcatcttcaaagccattacagtggcattaactgcactcctacatttagaataacaatggttgttaagattctaa |
28761073 |
T |
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| Q |
116 |
actggcaaacacctacgcaattttgttgtaagaaccaataggtgacggagagtcaaatgatgccgtggatgagaagtttaacttttgttgttatagattt |
215 |
Q |
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| T |
28761074 |
actggcaaacacctacgcaattttgttgtaagaaccaataggtgacggagagtcaaatgatgccgtggatgagaagtttaacttttgttgttatagattt |
28761173 |
T |
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| Q |
216 |
aaggttgaaactcggtaacttctatctttgttgtaacgacactcttaattgaagatgtgtaaaatattttttgtgtttgtgtttgacactcacccaagac |
315 |
Q |
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| T |
28761174 |
atggttgaaactcggcaacttctatctttgttgtaccaacactcttaattgaagatgtgtgaaatattttatgtgtttgtgtttgacactcacccaagac |
28761273 |
T |
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| Q |
316 |
taacatatatgattatatttataattaatcattttctcaaattactactttgtgtcgacatattagatgatatgtccggtctctatttcttaatctcaat |
415 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28761274 |
taacatatatgattatatttataattaattattttctcaaattactactttgtatcgacatattagatgatatgttcggtctctatttcttaatctcaat |
28761373 |
T |
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| Q |
416 |
atacgatattttggcaagatggttcttaatatatttggatgtgtttgtttcaaggctatc |
475 |
Q |
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| T |
28761374 |
atacgatattttaacaagatcgttcttaatatatttgggtgtgtttgtttcaaggctatc |
28761433 |
T |
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