View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18021_low_12 (Length: 461)

Name: NF18021_low_12
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18021_low_12
NF18021_low_12
[»] chr5 (5 HSPs)
chr5 (22-142)||(8466623-8466743)
chr5 (267-346)||(8467320-8467399)
chr5 (376-452)||(8467399-8467475)
chr5 (173-251)||(8467198-8467276)
chr5 (138-176)||(8467152-8467190)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 8466623 - 8466743
Alignment:
Q  22 tagatatgagtgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgag 121  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  8466623 tagatatgaatgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgag 8466722  T
Q  122 ttaagatgctcagataaatta 142  Q
    |||||||||||||||||||||    
T  8466723 ttaagatgctcagataaatta 8466743  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
Q  267 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467320 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 8467399  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 8467399 - 8467475
Alignment:
Q  376 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467399 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct 8467475  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
Q  173 attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 251  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467198 attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 8467276  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
Q  138 aattattaatacatgcactttgattgtcacagtgaatta 176  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  8467152 aattattaatacttgcactttgattgtcatagtgaatta 8467190  T

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