View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_13 (Length: 457)
Name: NF18021_low_13
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 608161 - 608598
Alignment:
| Q |
1 |
agaaggaggatacacttctaaaatcgaggacctttctatccaaattagcaaacttggaagatgcttctgaagaggatttgagaagcgcctgaatgtggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
608161 |
agaaggaggatacacttctaaaatcgaggacctttctatccaaattagcaaacttggaagatgcttttaaagaggatttgagaagcgcctgaatgtggaa |
608260 |
T |
|
| Q |
101 |
gcataacctcgacatcctagcatcttgcatttgaacgagtgaactctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggatcctat |
200 |
Q |
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| T |
608261 |
gcataacctcgacatcctagcatcttgcatttgaacgagtgaactctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggatcctat |
608360 |
T |
|
| Q |
201 |
caatcaatttgtcgttggaatattgggaacatagacttctatttaaaaattcttgcagtattgagactccaattactttagatatatagtcacgagaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| || |
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| T |
608361 |
caatcaatttgtcgttggaatattgggaacatagacttctatttaaaatttcttgtagtattgagactccaattactttag--atatagtcacgagggat |
608458 |
T |
|
| Q |
301 |
cgtgttttcgatcatttttgtaagggttcttgttaacaataatatcacataataaaatcatggtaggaaatataatgttttgctttttacatcggagtaa |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
608459 |
tgtgttttcgatca-ttttgtaagggttcttgttaacaataatatcaaataataaaatcatggtaggaaatataatgttttgctttttacatcggagtag |
608557 |
T |
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| Q |
401 |
aatatgagagacttcctcttatttgtgctcattgttatatt |
441 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||| |
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| T |
608558 |
aacatgagagacttcctcttatttgtgctcattgtcatatt |
608598 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 3090918 - 3090970
Alignment:
| Q |
143 |
actctagttttcagtccgagcaaacatagataaacaaatgtacaatgttggat |
195 |
Q |
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||||||| ||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
3090918 |
actctagacttcagtccgagcaaacaaagataaatcaatgttcaatgttggat |
3090970 |
T |
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