View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_14 (Length: 453)
Name: NF18021_low_14
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 15694378 - 15694810
Alignment:
| Q |
19 |
tctgcacctttcatttgtaagatctctactgcattgaaccagtccatacctaccctcagtagaactcaaattgaaactgctcatataatacaattggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15694378 |
tctgcacctttcatttgtaagatctctactgcattgaaccagtccatacctaccctcagtagaactcaaattgaaactgctcatataatacaattggttt |
15694477 |
T |
|
| Q |
119 |
ctctcagtagttgcttttttgatcaaaaatttcatcaaatcctcacttttctgaatttctattgcattagagacggttttagatccaacacgagtccaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15694478 |
ctctcagtagttgcttttttgatcaaaaatttcatcaaatcctcacttttctgaatttctattgcattagagacggttttagatccaacacgagtccaat |
15694577 |
T |
|
| Q |
219 |
tagggtacgttgtgactttcccaaagaaattctcatttgagtacctcaaaatgcagtcactgtagaatatagtagcggcgactctattggggcagcgctc |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15694578 |
tagggtaagttgtgactttcccaaagaaattctcatttgagtacctcaaaatgcagtcgctgtaaaatatagtagcggcgactctattggggcagcgctc |
15694677 |
T |
|
| Q |
319 |
aagaacttttctagtagcagaagcgacacataattcacaaaagcttatatcgccacgacaatcatagagaccatacactgcatctccttttgttgtgttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15694678 |
aagaacttttctagtagcagaagcgacacataattcacaaaagcttacatcgccacgacaatcatagagaccatacactgcatctccttttgttgtgttt |
15694777 |
T |
|
| Q |
419 |
tcgcctatgctggtgtagttataacctttgctt |
451 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
15694778 |
tcgcctatgctgttgtagttataacctttgctt |
15694810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University