View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_17 (Length: 407)
Name: NF18021_low_17
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 4831701 - 4832089
Alignment:
| Q |
1 |
tacattaattttaaacaggataaggagccaacgtcaggcctagcctgaagtttcaaccgcggtcgtggagcatccgtggaggttatctgatgagtctgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4831701 |
tacattaattttaaacaggataaggagccaacgtcaggcctagcctgaagtttcaaccgcggtcgtggaacatccgtggaggttatctgatgagtctgat |
4831800 |
T |
|
| Q |
101 |
aagtggaattattcaaaagtctcaactccaatgaagcaatgcaaggtattgttggaccagtctttataaggcacacttgtatagtgtcggttgaaggggt |
200 |
Q |
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| T |
4831801 |
aagtggaattattcaaaagtctcaactccaatgaagcaatgcaaggtattgttggaccagtctttataaggcacacttgtatagtgtcggttgaaggggt |
4831900 |
T |
|
| Q |
201 |
gtgaataatctctgtatatttgtaaggatccaaaggagatatattgattggtctccaaagatctagtccaagatacagatcaaaagattgtgtttgattg |
300 |
Q |
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| T |
4831901 |
gtgaataatctctgtatatttgtaaggatccaaaggagatatattgattggtctccaaagatctagtccaagatacaaatcaaaagattgtgtttgattg |
4832000 |
T |
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| Q |
301 |
ttgccatcatagtttccatatgaaaagaaagccctaagtagataagttttatttttgccttgttttggtttcaaggtgtagcagtttct |
389 |
Q |
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| T |
4832001 |
ttgccatcatagtttccatatgaaaagaaagccctaagtagataatttttattttttccttgttttggtttcaaggtgtagcagtttct |
4832089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 389
Target Start/End: Original strand, 4850598 - 4850911
Alignment:
| Q |
76 |
gtggaggttatctgatgagtctgataagtggaattattcaaaagtctcaactccaatgaagcaatgcaaggtattgttggaccagtctttataaggcaca |
175 |
Q |
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| T |
4850598 |
gtggagatcatctgatgattctgataaattgaattgttcaaaagtctcaattccaatgaggaaatgcaagggattattggtccagtctttacaaggcaca |
4850697 |
T |
|
| Q |
176 |
cttgtatagtgtcggttgaaggggtgtgaataatctctgtatatttgtaaggatccaaaggagatatattgattggtctccaaagatctagtccaagata |
275 |
Q |
| |
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| | ||||||||| |||||||| |||||||| ||||| ||| | ||||| |||| | || | ||||||| | ||||||||| | ||||||||| |
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| T |
4850698 |
catttatagtgtcagttgaaggagtgtgaatgatctccgtaaaagtgtaatgatcagtattagtgaaattgatttttttccaaagattaactccaagata |
4850797 |
T |
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| Q |
276 |
cagatcaaaagattgtgtttgattgttgccatcatagtttccatatgaaaagaaagccctaagtagataagttttatttttgccttgttttggtttcaag |
375 |
Q |
| |
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||| |||||||||||||||||||| || || ||||||||||||||||| || ||||| | || | ||| |||| |||||||| | ||| |||||||| |
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| T |
4850798 |
cagttcaaaagattgtgtttgattttttccgtcatagtttccatatgagaaaaaagcacgaatcatatactttttgtttttgccctctttaggtttcaat |
4850897 |
T |
|
| Q |
376 |
gtgtagcagtttct |
389 |
Q |
| |
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|| ||||||||||| |
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| T |
4850898 |
gtatagcagtttct |
4850911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 4806798 - 4806920
Alignment:
| Q |
95 |
tctgataagtggaattattcaaaagtctcaactccaatgaagcaatgcaaggtattgttggaccagtctttataaggcacacttgtatagtgtcggttga |
194 |
Q |
| |
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|||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||| || ||||||||||||||| ||||| ||||| ||||| |
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| T |
4806798 |
tctgataaatggaattattcaaaagcctcaattccaatgaagaaatgcaaggaattgttggactagactttataaggcacacatgtattgtgtcagttga |
4806897 |
T |
|
| Q |
195 |
aggggtgtgaataatctctgtat |
217 |
Q |
| |
|
||| ||||||||||||||||||| |
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| T |
4806898 |
aggagtgtgaataatctctgtat |
4806920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 389
Target Start/End: Original strand, 4796076 - 4796382
Alignment:
| Q |
83 |
ttatctgatgagtctgataagtggaattattcaaaagtctcaactccaatgaagcaatgcaaggtattgttggaccagtctttataaggcacacttgtat |
182 |
Q |
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||||||| ||| |||||||| ||||||| || ||||||||||| |||||||| | ||||||||| ||||||||||||||||||| ||||||||| | ||| |
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| T |
4796076 |
ttatctgttgattctgataaatggaattgtttaaaagtctcaattccaatgatgaaatgcaagggattgttggaccagtctttacaaggcacacatttat |
4796175 |
T |
|
| Q |
183 |
agtgtcggttgaaggggtgtgaataatctctgtatatttgtaaggatccaaaggagatatattgattggtctccaaagatctagtccaagatacagatca |
282 |
Q |
| |
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||||| | |||||| ||||| || ||||| || || |||| | | | | | ||||||| | |||||||||| | ||||||||| | |||| |
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| T |
4796176 |
agtgttagatgaaggagtgtgtatgatctccgtgtaagagtaatcaacagtattaatgaaattgatttttttccaaagatcaactccaagatataaatca |
4796275 |
T |
|
| Q |
283 |
aaagattgtgtttgattgttgccatcatagtttccatatgaaaagaaagccctaagtagataagttttatttttgccttgttttggtttcaaggtgtagc |
382 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||||||||||||||| | || | ||| |||||||||| || | ||| |||||||| ||||| | |
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| T |
4796276 |
aaagattgtgtttgatttttgccatcataatttccatatgaaaagaaagcacgaatcatatactttttatttttaccctctttaggtttcaatgtgtaac |
4796375 |
T |
|
| Q |
383 |
agtttct |
389 |
Q |
| |
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| ||||| |
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|
| T |
4796376 |
aatttct |
4796382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 389
Target Start/End: Original strand, 4806952 - 4807086
Alignment:
| Q |
255 |
ccaaagatctagtccaagatacagatcaaaagattgtgtttgattgttgccatcatagtttccatatgaaaagaaagccctaagtagataagttttattt |
354 |
Q |
| |
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|||||| || | |||||||||||| | |||||| ||| |||| || |||||||| |||||||||||||| ||||| | || | ||| |||||||| |
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| T |
4806952 |
ccaaaggtccactccaagatacagttgaaaagactgttgcagattttttccatcataatttccatatgaaaataaagcacgaatcaaatactttttattt |
4807051 |
T |
|
| Q |
355 |
ttgccttgttttggtttcaaggtgtagcagtttct |
389 |
Q |
| |
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|| || | |||||||||||| |||||||||||||| |
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| T |
4807052 |
tttccctcttttggtttcaatgtgtagcagtttct |
4807086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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