View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_19 (Length: 396)
Name: NF18021_low_19
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 50095629 - 50095257
Alignment:
| Q |
1 |
aaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgttatgtaaccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50095629 |
aaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgttatgtaaccagt |
50095530 |
T |
|
| Q |
101 |
atgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagaccacagttactctgaacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50095529 |
atgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagatcacagttactctgaacaaa |
50095430 |
T |
|
| Q |
201 |
ttccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50095429 |
ttccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaat |
50095330 |
T |
|
| Q |
301 |
gacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaagg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50095329 |
gacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctcaatgttaaagg |
50095257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University