View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_20 (Length: 395)
Name: NF18021_low_20
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 5440383 - 5440020
Alignment:
| Q |
15 |
catagggttggaaaagaaacaatcaatgtttaatgaaattcttctcctccatggctatcacgcacccttttcaacaaaaataaataaatcacggggctca |
114 |
Q |
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| T |
5440383 |
catagggttggaaaagaaacagtcaatgtttaatgaaattcttctcctccatggctatcacgcacccttttcaacaaaaataaataaatcacggggctca |
5440284 |
T |
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| Q |
115 |
cactcattttactatattttcctttttaaccgaaaaatttcccaagacgnnnnnnnagctacaccaagaaatacatgaacagatagaaaatggaagaccg |
214 |
Q |
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| T |
5440283 |
cactcattttactatattttcctttttaaccgaaaaatttcccaaaacgtttttttagctacaccaagaaatacatgaacagatagaaaaaggaagaccg |
5440184 |
T |
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| Q |
215 |
gtaaagagatgtaaatatagcaaaataagttttgtgtttaattgaatgtctctaaattatgcatattagccaaacaacatgaccttaattgtataggctc |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5440183 |
gtaaagatatgtaaatatagcaaaataagttttgtgtttaattggatgtctctaaattatgcatattagccaaacaacgtgaccttaattgtataggctc |
5440084 |
T |
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| Q |
315 |
tgctaagctagttttgtgggtagtgtgttagttttcctcattcaggagtttatggtgccccgtg |
378 |
Q |
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| T |
5440083 |
tgctaagctagttttgtgggtagtgtgttagttttcctcattcaggagtttatggtgccccgtg |
5440020 |
T |
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