View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_21 (Length: 369)
Name: NF18021_low_21
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 139 - 353
Target Start/End: Original strand, 12194017 - 12194231
Alignment:
| Q |
139 |
tcaagatacagatttttctcggatgcaattgagagataccagaaagagctaaccaaattactaaaatgatacacaaatggcctaagttactaaaattatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12194017 |
tcaagatacagatttttctcggatgcaattgagagataccagaaagagctaaccaaattactaaaatgatacacaaatggcctaagttacgaaaattatt |
12194116 |
T |
|
| Q |
239 |
acaccatagttgtatctatttcgaatgccataaacatgtaataatgctctaacggaaaattatatctcttaggtaactatttatcttcttttcacaggtc |
338 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12194117 |
acaccatagttgtatctatttcaaatgccataaacatgtaataatgctctaacggaaaattatatctcttaggtaactgtttatcttcttttcacaggtc |
12194216 |
T |
|
| Q |
339 |
aaaaatatacaaatg |
353 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12194217 |
aaaaatatacaaatg |
12194231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 12193886 - 12193986
Alignment:
| Q |
8 |
gtaccaggaaacaatatcattgattcagatctaaaaaataaggtactagactcagcaaagaaaggaggcaatagaaacttgtttttaatgtactttggat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12193886 |
gtaccaggaaacaatatcattgattcagaactaaaaaataaggtactagactcagcaaagaaaggaggcaatagaaacttgtttttaatgtactttggat |
12193985 |
T |
|
| Q |
108 |
g |
108 |
Q |
| |
|
| |
|
|
| T |
12193986 |
g |
12193986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University