View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_22 (Length: 369)
Name: NF18021_low_22
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 33495220 - 33494884
Alignment:
| Q |
20 |
caactgctgttgtttaagttatttaaaactgatcatataattcattgtcaatatcttgacaattgttaacaacatgctatttattattatgggaatgtta |
119 |
Q |
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| T |
33495220 |
caactgctgttgtttaagttatttaaaactgatcatataatgaattgtcaatatcttgacaattgttaacaacatgctatttattattatgggaatgtta |
33495121 |
T |
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| Q |
120 |
agtgaattttactattaaaataggttgactttctttggatatttcccataccatgctattagcacccagctacttgaagctttagtgcatgtttggaatc |
219 |
Q |
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| T |
33495120 |
agtgaattttactattaaaataggttgactttctttggatatttaccataccatgctattagcacccagctacttgaagctttagtgcatgtttggaatc |
33495021 |
T |
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| Q |
220 |
atgacgggtttgacaatgttgacgagccaccgtaattttgttaaacttattacaaatcaaaacagacgcttaatgaaaccacgatcaaattttctttgag |
319 |
Q |
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| T |
33495020 |
atgacgggtttgacaatgttgacgagccaccgtaattttgttaaacttattacaaatcaaaacagacgcttaatgaaaccacgatcaaattttctttgag |
33494921 |
T |
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| Q |
320 |
acgtgagattggttgtggtttgtagtttttgtctcct |
356 |
Q |
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| T |
33494920 |
acgtgagattggttgtggtttgtagtttttgtctcct |
33494884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 33520829 - 33520980
Alignment:
| Q |
18 |
aacaactgctgttgtttaagttatt---taaaactgatcatataattcattgtcaatatc--ttgacaattgttaacaacatgctattta--ttattatg |
110 |
Q |
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| T |
33520829 |
aacaactgctgttgtctaagttattatttgaaaatgatcatgtaattcattctcaatattaattgataattgttaacaacatactatttattttattaag |
33520928 |
T |
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| Q |
111 |
ggaatgttaagtgaattttactattaaaataggttgactttctttggatatt |
162 |
Q |
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| T |
33520929 |
ggaagtttatgtgaatttcactattaacataggttgattctgtttggatatt |
33520980 |
T |
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