View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_25 (Length: 358)
Name: NF18021_low_25
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 35 - 344
Target Start/End: Original strand, 40647384 - 40647693
Alignment:
| Q |
35 |
cttgtttgaggacaatgaagcttagcgcatctcatattctgctcattattaccttttatctagtttctagtagataccttatggcattggcaaagacact |
134 |
Q |
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| T |
40647384 |
cttgtttgaggacaatgaagcttagcgcatctcatattctgctcattattaccttttatcgagtttctagtagataccttatggcattggcaaagacact |
40647483 |
T |
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| Q |
135 |
attgtatagggtctttaaatcgagcgtccctaacacttatggtggaattaagacnnnnnnntgaacttgatctataaatttggcgtctgtaacactatag |
234 |
Q |
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| T |
40647484 |
attgtatagggtctttaaatcgagcgtccctaacacttacggtggaattaagactaaaaaagtaacttgatctataaatttggcgtctgtaacactatag |
40647583 |
T |
|
| Q |
235 |
cggaattagagacagattacgtcttctaataatactattaagtttacactttttatatcttgacacaaaattgattttgagtggaatccatttggactca |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40647584 |
cggaattagagacagattacgtcttctaataatactattaagtttacactttttatatcttgacacaaaattgattttgagttgaatccatttggactca |
40647683 |
T |
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| Q |
335 |
ccaacatatt |
344 |
Q |
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|||||||||| |
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| T |
40647684 |
ccaacatatt |
40647693 |
T |
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