View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_26 (Length: 357)
Name: NF18021_low_26
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_26 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0428 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 1276 - 938
Alignment:
| Q |
5 |
tgtccaataatataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattga |
104 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1276 |
tgtccattaaaataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattga |
1177 |
T |
|
| Q |
105 |
gttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1176 |
gttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgc |
1077 |
T |
|
| Q |
205 |
ttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076 |
ttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactg |
977 |
T |
|
| Q |
305 |
aaagtattgattataacaccatcaaacaatgacgatttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
976 |
aaagtattgattataacaccatcaaacaatgacgatttt |
938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 33257158 - 33256820
Alignment:
| Q |
5 |
tgtccaataatataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattga |
104 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33257158 |
tgtccattaaaataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattga |
33257059 |
T |
|
| Q |
105 |
gttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33257058 |
gttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgc |
33256959 |
T |
|
| Q |
205 |
ttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33256958 |
ttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactg |
33256859 |
T |
|
| Q |
305 |
aaagtattgattataacaccatcaaacaatgacgatttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33256858 |
aaagtattgattataacaccatcaaacaatgacgatttt |
33256820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 336
Target Start/End: Original strand, 8294597 - 8294928
Alignment:
| Q |
5 |
tgtccaataatataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattga |
104 |
Q |
| |
|
|||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8294597 |
tgtccactaaaataggcagaactagaatttttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttga |
8294696 |
T |
|
| Q |
105 |
gttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8294697 |
gttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggttgttgattttccaaccaccttaaacacattgacatgtttgc |
8294796 |
T |
|
| Q |
205 |
ttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactg |
304 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||| | || |
|
|
| T |
8294797 |
ttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtg |
8294896 |
T |
|
| Q |
305 |
aaagtattgattataacaccatcaaacaatga |
336 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |
|
|
| T |
8294897 |
aaagtattcataataacaccatcaaacaatga |
8294928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 329
Target Start/End: Original strand, 894674 - 894972
Alignment:
| Q |
34 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | ||||||||||||||| ||||| ||||||||||||||||| || ||||| | |||||||||||| |
|
|
| T |
894674 |
tttacttggaactctaacaacccacaagaatttcttaccactcaattctagtccaaatgctaactcattgagttgttcatgagaaactgttccaccactc |
894773 |
T |
|
| Q |
134 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
230 |
Q |
| |
|
||||| | ||| ||| ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||| || |
|
|
| T |
894774 |
ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtgga |
894873 |
T |
|
| Q |
231 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaa |
329 |
Q |
| |
|
||||| || ||| ||| || |||||||||| | |||||||| | ||||| | | || ||||||||| | ||||||| || || ||||||||||||| |
|
|
| T |
894874 |
ggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaa |
894972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 281
Target Start/End: Complemental strand, 905969 - 905719
Alignment:
| Q |
34 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
133 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| |
|
|
| T |
905969 |
tttacttggaactctaacaacccacaagaactttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
905870 |
T |
|
| Q |
134 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
230 |
Q |
| |
|
||||| | ||| ||| ||||||| |||| || ||||| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| | |
|
|
| T |
905869 |
ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataa |
905770 |
T |
|
| Q |
231 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtaccctta |
281 |
Q |
| |
|
| ||||| || ||| |||||| |||||||||| | |||||||| ||||||| |
|
|
| T |
905769 |
tgggtcccactggataaacacaaggtttctctttttcttgaagaaccctta |
905719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 563958 - 564076
Alignment:
| Q |
45 |
ctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagac |
144 |
Q |
| |
|
||||||||||||| | ||||| |||| ||||||||||| || || ||||||||||| | ||| | |||||| | |||||||||||| ||||| || || |
|
|
| T |
563958 |
ctctcacaacccaaagaaacttttgactactcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccactaccaaatgaaac |
564057 |
T |
|
| Q |
145 |
aaaaataacagaacttggt |
163 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
564058 |
aaaaaccacagaatttggt |
564076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 548925 - 549061
Alignment:
| Q |
7 |
tccaataatataagcagaactagaatgtttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagt |
106 |
Q |
| |
|
|||| ||| |||||||||||| || || ||| ||||| ||| | ||||||||| || ||| |||||| |||||| |||||||||| |||||||| | |
|
|
| T |
548925 |
tccactaaaataagcagaacttgagtgcttatttggaattctaataacccacaaaaaattgcaaccacttgattctaacccaaaagctatctcattgatt |
549024 |
T |
|
| Q |
107 |
tgatcttgagagagtgttccaccacttccaaaggaga |
143 |
Q |
| |
|
|| || |||| ||||| ||||||||| ||||| |||| |
|
|
| T |
549025 |
tgttcatgagtgagtgctccaccactcccaaaagaga |
549061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 1963387 - 1963285
Alignment:
| Q |
36 |
tacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcc |
135 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||| ||||||||| | ||| ||||| ||||||| | ||| ||||| || ||||| |||||||| || |
|
|
| T |
1963387 |
tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc |
1963288 |
T |
|
| Q |
136 |
aaa |
138 |
Q |
| |
|
||| |
|
|
| T |
1963287 |
aaa |
1963285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 3707790 - 3707696
Alignment:
| Q |
45 |
ctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaag |
139 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||| || || ||||||| |||||| ||| | |||||| | ||||| |||||||||||| |
|
|
| T |
3707790 |
ctctcaaaacccacaagaatttctgaccactcaattccagccccaaagctagttcattggtttgttgttgagataaagttcctccacttccaaag |
3707696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 3770405 - 3770505
Alignment:
| Q |
45 |
ctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagac |
144 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| || || || ||||||| |||||| ||| | |||||| | ||||| |||||||||||| |||| |
|
|
| T |
3770405 |
ctctcaaaacccacaagaatttctgaccactcaactccagccccaaagctagttcattggtttgttgttgagaaaaagttcctccacttccaaagcagac |
3770504 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
3770505 |
a |
3770505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 46720409 - 46720498
Alignment:
| Q |
174 |
ccaaccaccttaaacacactgacatgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctct |
264 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||| |||||||||| |||||||| |
|
|
| T |
46720409 |
ccaacaaccttgaacacactgacatgcttgcttcattatttgactcattcctaatggcaggtccaa-cggataaacactagggttctctct |
46720498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 46720520 - 46720598
Alignment:
| Q |
258 |
tctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaaacaatga |
336 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||| | |||||||||| || |||||||||||||||||||| |
|
|
| T |
46720520 |
tctctctctctctaagtacccttatggcttccagttccaaatcagtgaaagtattcataataacaccatcaaacaatga |
46720598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 11847 - 11952
Alignment:
| Q |
52 |
aacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagacaaaaata |
151 |
Q |
| |
|
|||||| || ||||| |||||||| ||||| | ||||||||||||||||| | ||| |||||||| |||||||||||||||||||| || ||||| | | |
|
|
| T |
11847 |
aacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaa |
11946 |
T |
|
| Q |
152 |
acagaa |
157 |
Q |
| |
|
|||||| |
|
|
| T |
11947 |
acagaa |
11952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 15380 - 15523
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| |||||||||||||| | ||| | |||||||||||||| | ||||||||||| ||||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
15380 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
15479 |
T |
|
| Q |
137 |
aaggagacaaaaataacagaacttggtggctgattttccaacca |
180 |
Q |
| |
|
|| || ||| | | ||||||| || |||| || |||| |||||| |
|
|
| T |
15480 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
15523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 60997 - 60892
Alignment:
| Q |
52 |
aacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagacaaaaata |
151 |
Q |
| |
|
|||||| || ||||| |||||||| ||||| | ||||||||||||||||| | ||| |||||||| |||||||||||||||||||| || ||||| | | |
|
|
| T |
60997 |
aacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaa |
60898 |
T |
|
| Q |
152 |
acagaa |
157 |
Q |
| |
|
|||||| |
|
|
| T |
60897 |
acagaa |
60892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 57464 - 57321
Alignment:
| Q |
37 |
acttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcca |
136 |
Q |
| |
|
|||||| |||||||||||||| | ||| | |||||||||||||| | ||||||||||| ||||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
57464 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
57365 |
T |
|
| Q |
137 |
aaggagacaaaaataacagaacttggtggctgattttccaacca |
180 |
Q |
| |
|
|| || ||| | | ||||||| || |||| || |||| |||||| |
|
|
| T |
57364 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
57321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 22144 - 22074
Alignment:
| Q |
68 |
tgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaa |
138 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
22144 |
tgaccactcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaa |
22074 |
T |
|
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 16490744 - 16490658
Alignment:
| Q |
70 |
accactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacaga |
156 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| | ||| ||||| || |||||||||||||||||||| || ||||| | |||||| |
|
|
| T |
16490744 |
accactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaagacacaaacaaaacaga |
16490658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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