View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18021_low_28 (Length: 349)
Name: NF18021_low_28
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 100 - 333
Target Start/End: Original strand, 2439330 - 2439563
Alignment:
| Q |
100 |
gtaacttttgtttttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2439330 |
gtaacttttgtttttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacatgt |
2439429 |
T |
|
| Q |
200 |
acaatgggtctaatcattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaata |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2439430 |
acaatgggtctaattattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaata |
2439529 |
T |
|
| Q |
300 |
acatgtcaagtaaagccattaaggctcaagatga |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
2439530 |
acatgtcaagtaaagccattaaggctcaagatga |
2439563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 113 - 333
Target Start/End: Complemental strand, 2673353 - 2673133
Alignment:
| Q |
113 |
ttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaa |
212 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||||| ||| | |||||||||||||| || |||||| ||||| || | | |||||||| |||| |
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|
| T |
2673353 |
ttcaaattaattacacaggtaagatctttggtgggtgatagattggctctagtggtacaaacaatttcagcagtggtaatagcattcacaatgggactaa |
2673254 |
T |
|
| Q |
213 |
tcattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaa |
312 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||||| ||| ||| | ||||| ||| ||||||||||| |||||||| ||||||||||| || |
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|
| T |
2673253 |
tcattgcatggagactcgccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaagacgtgtccttcttaagaacatgtcaagcaa |
2673154 |
T |
|
| Q |
313 |
agccattaaggctcaagatga |
333 |
Q |
| |
|
|||||| ||||| |||||||| |
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|
| T |
2673153 |
agccatcaaggcccaagatga |
2673133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 112 - 333
Target Start/End: Complemental strand, 2642194 - 2641973
Alignment:
| Q |
112 |
tttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtcta |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||| ||| | |||||||||||||| ||||||||| ||||| || | | ||||||||| || |
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|
| T |
2642194 |
tttcaaattaataacacaggtaagatctttggtgagtgatagattggcgctagtggtacaaacaatatcagcagtggtaatatcattcacaatgggttta |
2642095 |
T |
|
| Q |
212 |
atcattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagta |
311 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||| ||| ||| | ||||| ||||||||| ||||| ||||| || || |||||||| | |
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|
| T |
2642094 |
atcatcgcatggagactagccattgttatgatagcagttcaaccccttatcatatgttgtttctacacaaggcgtgtccttctcaagaatatgtcaagca |
2641995 |
T |
|
| Q |
312 |
aagccattaaggctcaagatga |
333 |
Q |
| |
|
||||||| ||||| |||||||| |
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|
| T |
2641994 |
aagccatcaaggcccaagatga |
2641973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 331
Target Start/End: Complemental strand, 2569964 - 2569760
Alignment:
| Q |
127 |
acaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaatcattacatggaga |
226 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| || |||| |||||||| || ||||| ||||| || | | |||||||| ||||||||| |||||| | |
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|
| T |
2569964 |
acaggtaagatctttggtgggtgatagattggcattagtagtacaaacaatttcagcggtggtaatagcattcacaatgggcctaatcattgcatggaaa |
2569865 |
T |
|
| Q |
227 |
ctatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaaagccattaaggctc |
326 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||| ||||| ||||| ||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
2569864 |
ctagccattgttatgatagcagttcaaccacttatcatttattgtttctacacaaggcgtgtccttcttaagaacatgtcaagcaaagccatcaaggctc |
2569765 |
T |
|
| Q |
327 |
aagat |
331 |
Q |
| |
|
||||| |
|
|
| T |
2569764 |
aagat |
2569760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 2591304 - 2591512
Alignment:
| Q |
127 |
acaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaat--cattacatgga |
224 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| | |||||||||||||| || |||||| ||||| || | | |||||||| ||||| |||| |||||| |
|
|
| T |
2591304 |
acaggtaagatctttggtgggtgatagattggctctagtggtacaaacaatttcagcagtggtaatagcattcacaatgggactaatatcattgcatgga |
2591403 |
T |
|
| Q |
225 |
gactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaaagccattaaggc |
324 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| ||| | ||||| ||| ||||| |||| ||||||| ||||||||||| |||||||| ||||| |
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|
| T |
2591404 |
gactagccattgttatgatagcagttcaaccagttatcatatgttgtttctatacaaggtgtgtccttcttaggaacatgtcaagaaaagccatcaaggc |
2591503 |
T |
|
| Q |
325 |
tcaagatga |
333 |
Q |
| |
|
|||||||| |
|
|
| T |
2591504 |
ccaagatga |
2591512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 2622850 - 2623056
Alignment:
| Q |
127 |
acaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaatcattacatggaga |
226 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||| ||||||| || |||||| ||||| || | | |||||||| ||| | ||| |||||||| |
|
|
| T |
2622850 |
acaggtaagatctttggtgggtgatagattgtctctagtgatacaaacaatttcagcagtggtaatagcattcacaatgggactacttattgcatggaga |
2622949 |
T |
|
| Q |
227 |
ctatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaaagccattaaggctc |
326 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| ||| | ||||| ||||||||| ||| |||||||| || ||||||| |||||| | ||||| | |
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|
| T |
2622950 |
ttagccattgttatgatagcagttcaaccaattatcatatattgtttctacacaaggtttgtccttcttaagaatatgtcaaacaaagccgtcaaggccc |
2623049 |
T |
|
| Q |
327 |
aagatga |
333 |
Q |
| |
|
||||||| |
|
|
| T |
2623050 |
aagatga |
2623056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 333
Target Start/End: Complemental strand, 2597516 - 2597314
Alignment:
| Q |
131 |
gtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaatcattacatggagactat |
230 |
Q |
| |
|
||||||||| ||||||||||| | ||| || ||| |||||||| || |||||| || || || | | |||||||| ||||||||| ||||||||||| |
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|
| T |
2597516 |
gtaagatctttggtgggtgatcgattggcattagcagtacaaacaatttcagcagtgataatagcattcacaatgggcctaatcattgcatggagactaa |
2597417 |
T |
|
| Q |
231 |
ccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagtaaagccattaaggctcaaga |
330 |
Q |
| |
|
|||||||||||||| ||| |||||| ||| || | ||||| ||| ||||| ||||| |||||||| ||||||| ||| |||||||| ||||||||||| |
|
|
| T |
2597416 |
ccattgttatgatagtagtgcaaccagttattatatgttgtttctatacaaggcgtgtccttcttaagaacatgttaagcaaagccatcaaggctcaaga |
2597317 |
T |
|
| Q |
331 |
tga |
333 |
Q |
| |
|
||| |
|
|
| T |
2597316 |
tga |
2597314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 2450096 - 2450237
Alignment:
| Q |
141 |
tggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtctaatcattacatggagactatccattgttat |
240 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||| ||||| ||| | | |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2450096 |
tggtgggtgatagtttaggaacagtggtacaaaccatatcagcagtggtaacaacattcataatgggactaatcattacatggagactatcaattgttat |
2450195 |
T |
|
| Q |
241 |
gatatcagttcaaccaattaccattttttgttactacacaag |
282 |
Q |
| |
|
|||| |||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
2450196 |
gatagcagttcaaccaattcacatggtttgtttctacacaag |
2450237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 314
Target Start/End: Original strand, 53393344 - 53393546
Alignment:
| Q |
112 |
tttcaaattaataatacaggtaagatctgtggtgggtgatagtttgtcactagtggtacaaactatatcagcaatggtagtaacctgtacaatgggtcta |
211 |
Q |
| |
|
|||||||||||||| || | |||||||| |||| ||||||| ||| | ||||| ||| |||| ||||| ||| ||||| || | | ||||||||| || |
|
|
| T |
53393344 |
tttcaaattaataacacggttaagatctttggttagtgatagattggcgctagttgtaaaaacaatatcggcagtggtaatatcattcacaatgggttta |
53393443 |
T |
|
| Q |
212 |
atcattacatggagactatccattgttatgatatcagttcaaccaattaccattttttgttactacacaagacgtgttcttcttaataacatgtcaagta |
311 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||| ||||| ||| ||| | | ||| ||| |||||||| | ||||| || || |||||||| | |
|
|
| T |
53393444 |
atcattgcatggagactagccattgttatgatagcagtaaaaccacttatcatctgtagtttctatacaagacgcatccttctcaagaatatgtcaagca |
53393543 |
T |
|
| Q |
312 |
aag |
314 |
Q |
| |
|
||| |
|
|
| T |
53393544 |
aag |
53393546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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