View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_30 (Length: 341)
Name: NF18021_low_30
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 36388265 - 36388573
Alignment:
| Q |
16 |
aaagggagggtatgtgatttattttttaggataaaattgcaattcttgtagcttctataattgcaattgttctttatattaattactagttgcaatcatt |
115 |
Q |
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| T |
36388265 |
aaagggagggtatgtgatttattttttaggataaaattgcaattcttgtagcttctataattgcaattgttctttatattaattactagttgcaatcatt |
36388364 |
T |
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| Q |
116 |
ctgacttaaagaaagtgtcatatattagtttgtttagtgtcagctattctttttgtggtgttcaactattgcatggattttgtgccatatggtatatcaa |
215 |
Q |
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| T |
36388365 |
ctgacttaaagaaagtgtcatatattagtttgtttaatgtcagctattctttttgtggtgttcaactattgcatggattttgtgccatatggtatatcaa |
36388464 |
T |
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| Q |
216 |
tgtcttgcgtacaatctctcctatttcttcagcaagtgctaataatgtctaagttttgattgaataactgtaatattattatttttgggtcaacattaca |
315 |
Q |
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| T |
36388465 |
tgtcttgcgtacaatctctcctatttcttcagcaagtgctaataatgtctaagttttgattgaataactgtaatattattatttttgggtcaacattaca |
36388564 |
T |
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| Q |
316 |
cgtgcaaga |
324 |
Q |
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| T |
36388565 |
cgtgcaaga |
36388573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 36388194 - 36388226
Alignment:
| Q |
53 |
tgcaattcttgtagcttctataattgcaattgt |
85 |
Q |
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| T |
36388194 |
tgcaattcttgtagcttctataattgcaattgt |
36388226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 36374561 - 36374607
Alignment:
| Q |
162 |
ttctttttgtggtgttcaactattgcatggattttgtgccatatggt |
208 |
Q |
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| T |
36374561 |
ttctttttgtggtgttcaactattacatggactgtgtgcaatatggt |
36374607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 36412230 - 36412262
Alignment:
| Q |
53 |
tgcaattcttgtagcttctataattgcaattgt |
85 |
Q |
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| T |
36412230 |
tgcaattcttgtagcttctatagttgcaattgt |
36412262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 36417561 - 36417593
Alignment:
| Q |
53 |
tgcaattcttgtagcttctataattgcaattgt |
85 |
Q |
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| T |
36417561 |
tgcaattcttgtagcttctatagttgcaattgt |
36417593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 36426389 - 36426421
Alignment:
| Q |
53 |
tgcaattcttgtagcttctataattgcaattgt |
85 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
36426389 |
tgcaattcttgtagcttctatagttgcaattgt |
36426421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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