View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_31 (Length: 332)
Name: NF18021_low_31
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 28553115 - 28552804
Alignment:
| Q |
1 |
agttgagaagaaattgaatcataccttgcaaagatgtgaactcaactcttataatcgacgtaaataaatcagtgatgataatatgtaaatacttctttta |
100 |
Q |
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| T |
28553115 |
agttgagaagaagttgactcatatctcacaaagatgtgaactcaactcttgtaatcgacgtaaataaatcagtggtgataatatgtaaatacttctttta |
28553016 |
T |
|
| Q |
101 |
agaatccgaccgactgaacttaatattataaaaaagaagttaagattcaaagtataaaatatttcacatatcaacaactatcaaaaaagactttaatccc |
200 |
Q |
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| T |
28553015 |
aaaatccgaccgactgaacttaatattataaaaaagaagttaagattcaaagtataaaatatttcacatatcaacaactatcaaaaaagactttaatccc |
28552916 |
T |
|
| Q |
201 |
cacaaagggtcattttcttctttaagagagaaagaagattggagagcaaactctgactaggaaggtgagaaggcaggtcgtgatcaccgtgtgccttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28552915 |
cacaaagggtcattttcttctttaagagagaaagaagattggagagcaaactctgactaggaaggtgagaaggcaggtcgtgatcaccgtgtgccttaaa |
28552816 |
T |
|
| Q |
301 |
ccacacttcttt |
312 |
Q |
| |
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|||||||||||| |
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| T |
28552815 |
ccacacttcttt |
28552804 |
T |
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