View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_33 (Length: 311)
Name: NF18021_low_33
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35203002 - 35202700
Alignment:
| Q |
1 |
acctttatgaatacaaaatttagttgaggcaaatggataagttgctattgatactaaaatcgaggaagtaagagtgaggaattccctaacagaaaatatt |
100 |
Q |
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| T |
35203002 |
acctttatgaatacaaaatttagttgaggcaaatggataagttgctattgatactaaaatcgacgaagtaagagtgaggaattccctaacagaaaatatt |
35202903 |
T |
|
| Q |
101 |
aattggattttgcataaatggcttagttcatattttcctttgttcaattctacttatggagattcctttatcaatacagagagattccaattacaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202902 |
aattggattttgcataaatggcttagttcatatttccctttgttcaattctacttatggagattcctttatcaatacagagagattccaattacaatttt |
35202803 |
T |
|
| Q |
201 |
atttaagttgtgcttctctgtttctctcttacaattctcctcattttctggttcctttgattattgaatttcccatgttgctccatgtagctatgccttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35202802 |
atttaagttgtgcttctctgtttctctcttacaattctcctcattttctggttcctttgattattgaatttcccatgttgctccatgtagctatgccctt |
35202703 |
T |
|
| Q |
301 |
gat |
303 |
Q |
| |
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||| |
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| T |
35202702 |
gat |
35202700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 35192671 - 35192631
Alignment:
| Q |
2 |
cctttatgaatacaaaatttagttgaggcaaatggataagt |
42 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35192671 |
cctttatgaatacaaaatttagttgaggcaaatggataagt |
35192631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 45533999 - 45533960
Alignment:
| Q |
217 |
tctgtttctctcttacaattctcctcattttctggttcct |
256 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| |
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| T |
45533999 |
tctgtttgtctcttacatttctcctcattttctggttcct |
45533960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 35475773 - 35475735
Alignment:
| Q |
224 |
ctctcttacaattctcctcattttctggttcctttgatt |
262 |
Q |
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||||||||||||||| ||||||||| ||||||||||||| |
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| T |
35475773 |
ctctcttacaattctactcattttccggttcctttgatt |
35475735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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